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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2468420 |
| Transcript ID | Lj4g3v2468420.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] gi|356525090|ref|XP_003531160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 86 | 86 | 3.00E-278 | – | |
| MobiDBLite | 1 | 29 | 29 | – | – | |
| PANTHER | 1 | 86 | 86 | 3.00E-278 | – | |
| Gene3D | 32 | 87 | 56 | 2.90E-14 | ||
| SUPERFAMILY | 33 | 91 | 59 | 4.59E-14 | ||
| SMART | 35 | 105 | 71 | 7.20E-10 | ||
| ProSiteProfiles | 36 | 97 | 62 | 12.936 | ||
| CDD | 38 | 86 | 49 | 9.56E-14 | – | |
| Pfam | 39 | 88 | 50 | 3.30E-12 | ||
| PANTHER | 111 | 544 | 434 | 3.00E-278 | – | |
| PANTHER | 111 | 544 | 434 | 3.00E-278 | – | |
| SMART | 143 | 221 | 79 | 2.30E-11 | ||
| ProSiteProfiles | 144 | 216 | 73 | 14.676 | ||
| CDD | 146 | 217 | 72 | 2.53E-11 | – | |
| Gene3D | 146 | 220 | 75 | 4.20E-14 | ||
| SUPERFAMILY | 147 | 223 | 77 | 9.64E-12 | ||
| Pfam | 147 | 217 | 71 | 6.70E-13 | ||
| Gene3D | 307 | 388 | 82 | 3.30E-16 | ||
| SMART | 311 | 383 | 73 | 8.20E-11 | ||
| ProSiteProfiles | 312 | 382 | 71 | 14.215 | ||
| SUPERFAMILY | 313 | 390 | 78 | 1.07E-13 | ||
| Pfam | 315 | 363 | 49 | 5.70E-13 | ||
| CDD | 315 | 383 | 69 | 2.35E-13 | – | |
| SUPERFAMILY | 385 | 468 | 84 | 8.23E-15 | ||
| Gene3D | 391 | 467 | 77 | 2.50E-15 | ||
| SMART | 392 | 466 | 75 | 3.50E-11 | ||
| ProSiteProfiles | 393 | 461 | 69 | 15.871 | ||
| CDD | 395 | 462 | 68 | 1.26E-17 | – | |
| Pfam | 396 | 461 | 66 | 4.60E-12 | ||
| SUPERFAMILY | 552 | 626 | 75 | 2.63E-15 | ||
| Gene3D | 555 | 626 | 72 | 4.10E-16 | ||
| SMART | 558 | 627 | 70 | 1.70E-13 | ||
| ProSiteProfiles | 559 | 622 | 64 | 16.94 | ||
| CDD | 561 | 623 | 63 | 7.04E-12 | – | |
| Pfam | 562 | 623 | 62 | 5.20E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj4g3v2468420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2468420.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.