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Lj4g3v2538150.1

Overview

Field Value
Gene ID Lj4g3v2538150
Transcript ID Lj4g3v2538150.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent RNA helicase dhx8-like [Glycine max] gi|356512355|ref|XP_003524885.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18934
1 645 645 0 –
PANTHER
PTHR18934:SF131
1 645 645 0 –
SMART
SM00487
2 184 183 7.40E-26
IPR014001
Gene3D
G3DSA:3.40.50.300
4 159 156 4.40E-51
IPR027417
SUPERFAMILY
SSF52540
8 535 528 9.25E-99
IPR027417
Pfam
PF00270
12 164 153 3.30E-07
IPR011545
ProSiteProfiles
PS51192
14 175 162 18.255
IPR014001
CDD
cd00046
22 157 136 6.87E-27 –
CDD
cd00079
182 340 159 1.80E-11 –
ProSiteProfiles
PS51194
198 374 177 15.797
IPR001650
Gene3D
G3DSA:3.40.50.300
201 343 143 6.20E-12
IPR027417
Pfam
PF00271
202 332 131 2.90E-14
IPR001650
Coils
Coil
220 240 21 – –
SMART
SM00490
224 333 110 4.30E-15
IPR001650
SMART
SM00847
396 491 96 3.10E-20
IPR007502
Pfam
PF04408
397 470 74 9.20E-19
IPR007502
Pfam
PF07717
525 636 112 3.00E-19
IPR011709
PANTHER
PTHR18934
676 698 23 0 –
PANTHER
PTHR18934:SF131
676 698 23 0 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 50

Expression data

Expression pattern

Expression pattern of Lj4g3v2538150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2538150.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.