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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2539410 |
| Transcript ID | Lj4g3v2539410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao] gi|508776142|gb|EOY23398.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 12 | 19 | 8 | – | – | |
| Phobius | 20 | 24 | 5 | – | – | |
| Phobius | 25 | 671 | 647 | – | – | |
| PANTHER | 52 | 543 | 492 | 0 | – | |
| PANTHER | 52 | 543 | 492 | 0 | – | |
| ProSiteProfiles | 64 | 94 | 31 | 6.665 | ||
| Gene3D | 64 | 126 | 63 | 9.80E-08 | ||
| ProSiteProfiles | 95 | 129 | 35 | 11.794 | ||
| Pfam | 95 | 141 | 47 | 7.00E-12 | ||
| TIGRFAM | 98 | 130 | 33 | 3.80E-08 | ||
| ProSiteProfiles | 130 | 164 | 35 | 6.138 | ||
| ProSiteProfiles | 165 | 195 | 31 | 7.673 | ||
| TIGRFAM | 170 | 198 | 29 | 4.20E-04 | ||
| Gene3D | 194 | 223 | 30 | 9.80E-08 | ||
| ProSiteProfiles | 196 | 230 | 35 | 12.266 | ||
| Pfam | 196 | 240 | 45 | 1.50E-07 | ||
| TIGRFAM | 198 | 232 | 35 | 2.70E-07 | ||
| Gene3D | 258 | 281 | 24 | 9.80E-08 | ||
| Pfam | 264 | 310 | 47 | 3.20E-09 | ||
| ProSiteProfiles | 264 | 298 | 35 | 10.337 | ||
| TIGRFAM | 266 | 300 | 35 | 4.10E-06 | ||
| ProSiteProfiles | 299 | 333 | 35 | 6.61 | ||
| ProSiteProfiles | 334 | 364 | 31 | 8.824 | ||
| Gene3D | 337 | 427 | 91 | 9.80E-08 | ||
| Pfam | 339 | 364 | 26 | 8.10E-06 | ||
| TIGRFAM | 339 | 366 | 28 | 0.0011 | ||
| Pfam | 365 | 412 | 48 | 1.40E-08 | ||
| ProSiteProfiles | 365 | 399 | 35 | 11.389 | ||
| TIGRFAM | 368 | 400 | 33 | 4.90E-05 | ||
| ProSiteProfiles | 400 | 430 | 31 | 7.443 | ||
| ProSiteProfiles | 436 | 466 | 31 | 7.388 | ||
| TIGRFAM | 440 | 463 | 24 | 0.0015 | ||
| Pfam | 442 | 463 | 22 | 0.041 | ||
| Gene3D | 496 | 522 | 27 | 9.80E-08 | ||
| ProSiteProfiles | 502 | 536 | 35 | 7.465 | ||
| Pfam | 508 | 534 | 27 | 0.17 | ||
| Pfam | 538 | 661 | 124 | 4.50E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v2539410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2539410.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.