Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2576100.1

Overview

Field Value
Gene ID Lj4g3v2576100
Transcript ID Lj4g3v2576100.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: 70 kDa peptidyl-prolyl isomerase-like isoform X2 [Cicer arietinum] gi|502140947|ref|XP_004504386.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10516
11 244 234 9.10E-285
IPR023566
PANTHER
PTHR10516:SF324
11 244 234 9.10E-285 –
SUPERFAMILY
SSF54534
17 149 133 3.34E-46 –
Gene3D
G3DSA:3.10.50.40
28 147 120 4.00E-55 –
Pfam
PF00254
53 142 90 3.90E-36
IPR001179
ProSiteProfiles
PS50059
57 145 89 33.628
IPR001179
SUPERFAMILY
SSF54534
147 265 119 6.55E-24 –
Gene3D
G3DSA:3.10.50.40
148 261 114 3.40E-32 –
Pfam
PF00254
170 259 90 5.00E-15
IPR001179
ProSiteProfiles
PS50059
173 262 90 18.856
IPR001179
SUPERFAMILY
SSF54534
265 399 135 5.50E-34 –
Gene3D
G3DSA:3.10.50.40
266 403 138 3.70E-40 –
Pfam
PF00254
284 379 96 1.50E-24
IPR001179
ProSiteProfiles
PS50059
290 382 93 23.496
IPR001179
SUPERFAMILY
SSF48452
395 547 153 9.62E-31
IPR011990
PANTHER
PTHR10516
399 568 170 9.10E-285
IPR023566
ProSiteProfiles
PS50005
399 432 34 7.729
IPR019734
SMART
SM00028
399 432 34 15
IPR019734
ProSiteProfiles
PS50293
399 432 34 7.913
IPR013026
PANTHER
PTHR10516:SF324
399 568 170 9.10E-285 –
Gene3D
G3DSA:1.25.40.10
404 553 150 3.00E-30
IPR011990
SMART
SM00028
448 481 34 0.037
IPR019734
ProSiteProfiles
PS50005
448 481 34 5.576
IPR019734
ProSiteProfiles
PS50293
448 515 68 14.347
IPR013026
SMART
SM00028
482 515 34 5.60E-05
IPR019734
ProSiteProfiles
PS50005
482 515 34 9.617
IPR019734
Pfam
PF13181
483 515 33 7.00E-04
IPR019734
Coils
Coil
515 535 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003755
Molecular function Peptidyl-prolyl cis-trans isomerase activity Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v2576100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2576100.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.