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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2576110 |
| Transcript ID | Lj4g3v2576110.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Glycine max] gi|356528278|ref|XP_003532731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 79 | 79 | 3.90E-169 | – | |
| PANTHER | 1 | 79 | 79 | 3.90E-169 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 9.536 | ||
| Pfam | 11 | 40 | 30 | 8.00E-04 | ||
| SUPERFAMILY | 11 | 107 | 97 | 2.28E-05 | ||
| Gene3D | 12 | 177 | 166 | 1.00E-05 | ||
| ProSiteProfiles | 44 | 78 | 35 | 7.169 | ||
| Pfam | 51 | 74 | 24 | 0.63 | ||
| ProSiteProfiles | 113 | 147 | 35 | 6.73 | ||
| ProSiteProfiles | 148 | 182 | 35 | 8.846 | ||
| Pfam | 152 | 178 | 27 | 0.043 | ||
| ProSiteProfiles | 285 | 315 | 31 | 6.489 | ||
| Gene3D | 295 | 394 | 100 | 2.90E-07 | ||
| SUPERFAMILY | 296 | 388 | 93 | 1.67E-10 | ||
| ProSiteProfiles | 319 | 353 | 35 | 10.358 | ||
| PANTHER | 320 | 339 | 20 | 3.90E-169 | – | |
| PANTHER | 320 | 339 | 20 | 3.90E-169 | – | |
| TIGRFAM | 323 | 350 | 28 | 4.10E-04 | ||
| Pfam | 323 | 350 | 28 | 1.00E-04 | ||
| ProSiteProfiles | 354 | 388 | 35 | 6.182 | ||
| PANTHER | 388 | 674 | 287 | 3.90E-169 | – | |
| PANTHER | 388 | 674 | 287 | 3.90E-169 | – | |
| ProSiteProfiles | 389 | 423 | 35 | 9.745 | ||
| Pfam | 389 | 434 | 46 | 1.30E-08 | ||
| TIGRFAM | 391 | 421 | 31 | 5.50E-04 | ||
| ProSiteProfiles | 424 | 458 | 35 | 9.767 | ||
| Gene3D | 425 | 655 | 231 | 4.50E-09 | ||
| SUPERFAMILY | 425 | 486 | 62 | 1.67E-10 | ||
| TIGRFAM | 427 | 459 | 33 | 9.10E-06 | ||
| ProSiteProfiles | 459 | 493 | 35 | 11.729 | ||
| TIGRFAM | 463 | 493 | 31 | 1.10E-05 | ||
| Pfam | 463 | 491 | 29 | 1.50E-04 | ||
| ProSiteProfiles | 494 | 528 | 35 | 11.466 | ||
| Pfam | 494 | 541 | 48 | 2.80E-12 | ||
| TIGRFAM | 496 | 530 | 35 | 2.10E-09 | ||
| ProSiteProfiles | 529 | 563 | 35 | 11.17 | ||
| TIGRFAM | 531 | 565 | 35 | 2.90E-04 | ||
| ProSiteProfiles | 564 | 598 | 35 | 10.742 | ||
| Pfam | 566 | 610 | 45 | 2.20E-07 | ||
| TIGRFAM | 568 | 599 | 32 | 1.50E-06 | ||
| ProSiteProfiles | 599 | 629 | 31 | 8.374 | ||
| TIGRFAM | 601 | 628 | 28 | 7.90E-04 | ||
| ProSiteProfiles | 633 | 667 | 35 | 6.851 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2576110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2576110.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.