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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015940
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 83 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.699s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004549.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Glycine max] gi|356511676|ref|XP_003524549.1| chr0 1668607 1678184 +
2 domain predictions
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Lj0g3v0269239.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 139479183 139480542 +
4 domain predictions
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Lj0g3v0301719.1
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X4 [Cicer arietinum] gi|502083515|ref|XP_004487483.1| chr0 156844375 156851154 +
2 domain predictions
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Lj0g3v0338569.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 177276636 177289116 +
4 domain predictions
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Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
4 domain predictions
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Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
4 domain predictions
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Lj1g3v1466220.1
n.a. PREDICTED: ubiquitin-conjugating enzyme E2 27-like isoform 1 [Glycine max] gi|356508845|ref|XP_003523164.1| chr1 17549155 17552308 -
3 domain predictions
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Lj1g3v1526280.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| chr1 18272805 18292132 +
4 domain predictions
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Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
4 domain predictions
 –
Lj1g3v4107150.1
n.a. Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| chr1 48875189 48881294 -
4 domain predictions
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Lj1g3v4763790.1
n.a. RHOMBOID-like protein 15 [Theobroma cacao] gi|508717744|gb|EOY09641.1| chr1 57152599 57158146 -
4 domain predictions
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Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
4 domain predictions
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Lj2g3v1644370.1
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25541563 -
4 domain predictions
 –
Lj2g3v3007320.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802046 38806439 -
3 domain predictions
 –
Lj2g3v3007330.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802931 38806439 -
3 domain predictions
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Lj2g3v3339780.1
n.a. n.a. chr2 42840476 42846276 +
4 domain predictions
 –
Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
4 domain predictions
 –
Lj3g3v0730420.1
n.a. PREDICTED: UBX domain-containing protein 1-like [Cicer arietinum] gi|502155980|ref|XP_004510266.1| chr3 8313323 8319716 -
3 domain predictions
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Lj3g3v1855440.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr3 23651120 23653846 -
3 domain predictions
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Lj3g3v2989270.1
n.a. OTU domain-containing protein [Medicago truncatula] gi|357453181|ref|XP_003596867.1| chr3 36999683 37002151 -
2 domain predictions
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Lj3g3v2989270.3
n.a. PREDICTED: OTU domain-containing protein 5-like isoform X1 [Cicer arietinum] gi|502083504|ref|XP_004487480.1| chr3 36999683 37005273 -
2 domain predictions
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Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
4 domain predictions
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Lj4g3v0217760.1
n.a. n.a. chr4 2786227 2790836 +
4 domain predictions
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Lj4g3v1427520.1
n.a. JOKA2 [Nicotiana tabacum] gi|337732515|gb|AEI71779.1| chr4 22215028 22219154 -
2 domain predictions
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Lj4g3v2603780.1
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920145 34925485 +
4 domain predictions
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Lj4g3v2603780.2
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920738 34925485 +
4 domain predictions
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Lj5g3v1496740.1
n.a. ATP-dependent DNA helicase Q4 [Medicago truncatula] gi|357441723|ref|XP_003591139.1| chr5 21720168 21723469 +
2 domain predictions
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Lj5g3v1496740.3
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
2 domain predictions
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Lj5g3v1496740.4
n.a. PREDICTED: ATP-dependent DNA helicase Q-like SIM-like [Cicer arietinum] gi|502117128|ref|XP_004495713.1| chr5 21720168 21725651 +
2 domain predictions
 –
Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
4 domain predictions
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Lj6g3v0670020.1
n.a. PREDICTED: DNA damage-inducible protein 1-like [Cicer arietinum] gi|502129048|ref|XP_004500164.1| chr6 6645889 6654281 +
3 domain predictions
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Lj6g3v1008170.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr6 11118178 11122359 +
2 domain predictions
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Lj6g3v1093250.1
n.a. PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1| chr6 13297706 13303416 +
3 domain predictions
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LotjaGi1g1v0004000.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757210 759149 +
4 domain predictions
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LotjaGi1g1v0004000.2
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|G7KFD2|G7KFD2_MEDTR AAA family ATPase; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757213 758934 +
3 domain predictions
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LotjaGi1g1v0053300.1
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7519997 7524722 +
3 domain predictions
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LotjaGi1g1v0053300.2
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7522304 7524262 +
3 domain predictions
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LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
4 domain predictions
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LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
4 domain predictions
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LotjaGi1g1v0135300.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
4 domain predictions
 –
LotjaGi1g1v0135300.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
4 domain predictions
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LotjaGi1g1v0135300.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
4 domain predictions
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LotjaGi1g1v0277000.1
n.a. Proline-rich cell wall-like protein; TAIR: AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9NZ09|UBAP1_HUMAN Ubiquitin-associated protein 1; TrEMBL-Plants: tr|I3SQZ2|I3SQZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0277000 LjG1.1_chr1 67813916 67819032 +
2 domain predictions
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LotjaGi1g1v0335000.1
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406361 79410057 -
3 domain predictions
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LotjaGi1g1v0335000.2
n.a. Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 LjG1.1_chr1 79406484 79410144 -
3 domain predictions
 –
LotjaGi1g1v0342400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80457990 80472977 +
4 domain predictions
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LotjaGi1g1v0342400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80458458 80472724 +
4 domain predictions
 –
LotjaGi1g1v0342400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80459623 80472724 +
4 domain predictions
 –
LotjaGi1g1v0506500.1
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.1 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102463381 102472242 -
4 domain predictions
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LotjaGi1g1v0506500.2
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469802 -
4 domain predictions
 –