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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • SM00165
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0269239.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 139479183 139480542 +
2 domain predictions
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Lj0g3v0338569.1
n.a. PREDICTED: ubiquitin carboxyl-terminal hydrolase 14-like [Glycine max] gi|356517211|ref|XP_003527282.1| chr0 177276636 177289116 +
2 domain predictions
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Lj0g3v0338909.1
n.a. PREDICTED: ubiquilin-1-like [Glycine max] gi|356501749|ref|XP_003519686.1| chr0 177477416 177484896 -
2 domain predictions
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Lj1g3v0180970.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL2-like [Glycine max] gi|356551781|ref|XP_003544252.1| chr1 2075745 2092386 +
2 domain predictions
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Lj1g3v1526280.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356518443|ref|XP_003527888.1| chr1 18272805 18292132 +
2 domain predictions
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Lj1g3v3328650.1
n.a. RAD23-like [Solanum tuberosum] gi|77745475|gb|ABB02636.1| chr1 37256074 37261582 +
2 domain predictions
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Lj1g3v4107150.1
n.a. Ubiquitin-associated domain-containing protein [Medicago truncatula] gi|357509361|ref|XP_003624969.1| chr1 48875189 48881294 -
2 domain predictions
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Lj1g3v4763790.1
n.a. RHOMBOID-like protein 15 [Theobroma cacao] gi|508717744|gb|EOY09641.1| chr1 57152599 57158146 -
2 domain predictions
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Lj2g3v1155470.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr2 18260546 18268422 +
2 domain predictions
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Lj2g3v1644370.1
n.a. PREDICTED: ubiquilin-like [Cicer arietinum] gi|502161708|ref|XP_004512257.1| chr2 25537249 25541563 -
2 domain predictions
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Lj2g3v3007320.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802046 38806439 -
2 domain predictions
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Lj2g3v3007330.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr2 38802931 38806439 -
2 domain predictions
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Lj2g3v3339780.1
n.a. n.a. chr2 42840476 42846276 +
2 domain predictions
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Lj3g3v0707070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr3 7617384 7624966 +
2 domain predictions
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Lj3g3v1855440.1
n.a. Ubiquitin-associated/translation elongation factor EF1B protein [Theobroma cacao] gi|508785689|gb|EOY32945.1| chr3 23651120 23653846 -
2 domain predictions
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Lj4g3v0217750.1
n.a. PREDICTED: E3 ubiquitin-protein ligase UPL1-like [Glycine max] gi|356512215|ref|XP_003524816.1| chr4 2777939 2794774 -
2 domain predictions
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Lj4g3v0217760.1
n.a. n.a. chr4 2786227 2790836 +
2 domain predictions
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Lj4g3v2603780.1
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920145 34925485 +
2 domain predictions
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Lj4g3v2603780.2
n.a. PREDICTED: UBX domain-containing protein 1-A-like [Glycine max] gi|356525231|ref|XP_003531230.1| chr4 34920738 34925485 +
2 domain predictions
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Lj5g3v2215070.1
n.a. Rad23 UV excision repair protein family isoform 1 [Theobroma cacao] gi|508710184|gb|EOY02081.1| chr5 31881296 31885879 +
2 domain predictions
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Lj6g3v1093250.1
n.a. PREDICTED: NEDD8 ultimate buster 1-like [Glycine max] gi|356530579|ref|XP_003533858.1| chr6 13297706 13303416 +
2 domain predictions
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LotjaGi1g1v0004000.1
n.a. Holliday junction ATP-dependent DNA helicase RuvB; TAIR: AT1G24290.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q8CG07|WRIP1_RAT ATPase WRNIP1; TrEMBL-Plants: tr|A0A0L9UUH5|A0A0L9UUH5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0004000 LjG1.1_chr1 757210 759149 +
2 domain predictions
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LotjaGi1g1v0053300.1
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7519997 7524722 +
2 domain predictions
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LotjaGi1g1v0053300.2
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|P28515|ELT1_CAEEL Transcription factor elt-1; TrEMBL-Plants: tr|I1JIT7|I1JIT7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0053300 LjG1.1_chr1 7522304 7524262 +
2 domain predictions
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LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
2 domain predictions
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LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
2 domain predictions
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LotjaGi1g1v0135300.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
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LotjaGi1g1v0135300.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
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LotjaGi1g1v0135300.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
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LotjaGi1g1v0342400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80457990 80472977 +
2 domain predictions
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LotjaGi1g1v0342400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80458458 80472724 +
2 domain predictions
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LotjaGi1g1v0342400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80459623 80472724 +
2 domain predictions
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LotjaGi1g1v0506500.1
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.1 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102463381 102472242 -
2 domain predictions
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LotjaGi1g1v0506500.2
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469802 -
2 domain predictions
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LotjaGi1g1v0506500.3
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469802 -
2 domain predictions
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LotjaGi1g1v0506500.4
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469806 -
2 domain predictions
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LotjaGi1g1v0506500.5
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.2 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469806 -
2 domain predictions
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LotjaGi1g1v0506500.6
n.a. Non-specific serine/threonine protein kinase; TAIR: AT3G01090.1 SNF1 kinase homolog 10; Swiss-Prot: sp|Q38997|KIN10_ARATH SNF1-related protein kinase catalytic subunit alpha KIN10; TrEMBL-Plants: tr|Q53VM4|Q53VM4_LOTJA Non-specific serine/threonine protein kinase; Found in the gene: LotjaGi1g1v0506500 LjG1.1_chr1 102464335 102469881 -
2 domain predictions
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LotjaGi1g1v0550600.1
n.a. RAD23 UV excision repair family protein; TAIR: AT5G38470.1 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L30|RD23D_ARATH Ubiquitin receptor RAD23d; TrEMBL-Plants: tr|I3SBD5|I3SBD5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0550600 LjG1.1_chr1 108165035 108170749 +
2 domain predictions
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LotjaGi1g1v0662300.2
n.a. Ubiquitin-associated domain-containing protein 2; TAIR: AT3G56740.1 Ubiquitin-associated (UBA) protein; Swiss-Prot: sp|Q9LET3|RBL20_ARATH Rhomboid-like protein 20; TrEMBL-Plants: tr|G7KQP7|G7KQP7_MEDTR Ubiquitin-associated/TS-N domain protein; Found in the gene: LotjaGi1g1v0662300 LjG1.1_chr1 122344086 122350636 -
2 domain predictions
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LotjaGi1g1v0742500.1
n.a. Rhomboid family protein; TAIR: AT3G58460.1 RHOMBOID-like protein 15; Swiss-Prot: sp|Q8LB17|RBL15_ARATH Rhomboid-like protein 15; TrEMBL-Plants: tr|A0A151TVU8|A0A151TVU8_CAJCA Uncharacterized protein family; Found in the gene: LotjaGi1g1v0742500 LjG1.1_chr1 131618126 131624108 -
2 domain predictions
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LotjaGi2g1v0277900.1
n.a. RAD23 UV excision repair family protein; TAIR: AT3G02540.3 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L31|RD23C_ARATH Ubiquitin receptor RAD23c; TrEMBL-Plants: tr|A0A151RI27|A0A151RI27_CAJCA Putative DNA repair protein RAD23-3; Found in the gene: LotjaGi2g1v0277900 LjG1.1_chr2 74961554 74969384 +
2 domain predictions
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LotjaGi2g1v0355900.1
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A151THR2|A0A151THR2_CAJCA Ubiquilin-1; Found in the gene: LotjaGi2g1v0355900 LjG1.1_chr2 83199158 83205368 -
2 domain predictions
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LotjaGi3g1v0002300.1
n.a. Ubiquitin family protein; TAIR: AT1G79650.2 Rad23 UV excision repair protein family; Swiss-Prot: sp|Q84L33|RD23B_ARATH Ubiquitin receptor RAD23b; TrEMBL-Plants: tr|A0A0S3SF25|A0A0S3SF25_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0002300 LjG1.1_chr3 333342 338615 +
2 domain predictions
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LotjaGi3g1v0312200.1
n.a. Ubiquitin-associated domain-containing family protein; TAIR: AT2G26920.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9LM84|WOX14_ARATH WUSCHEL-related homeobox 14; TrEMBL-Plants: tr|I1MIK5|I1MIK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0312200 LjG1.1_chr3 66056838 66061048 -
2 domain predictions
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LotjaGi3g1v0325900.1
n.a. Ubiquitinyl hydrolase 1; TAIR: AT3G20630.1 ubiquitin-specific protease 14; Swiss-Prot: sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14; TrEMBL-Plants: tr|A0A0S3S9M3|A0A0S3S9M3_PHAAN Ubiquitinyl hydrolase 1; Found in the gene: LotjaGi3g1v0325900 LjG1.1_chr3 69330125 69343966 -
2 domain predictions
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LotjaGi4g1v0020600.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K373|I1K373_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2550963 2567864 -
2 domain predictions
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LotjaGi4g1v0020600.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
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LotjaGi4g1v0020600.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
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LotjaGi4g1v0136800.1
n.a. Ubiquitin-like protein; TAIR: AT2G17200.1 ubiquitin family protein; Swiss-Prot: sp|Q9SII8|DSK2B_ARATH Ubiquitin domain-containing protein DSK2b; TrEMBL-Plants: tr|A0A0S3R3T1|A0A0S3R3T1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0136800 LjG1.1_chr4 20058434 20066917 -
2 domain predictions
 –