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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2604620 |
| Transcript ID | Lj4g3v2604620.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein SCAR3-like [Glycine max] gi|356528322|ref|XP_003532753.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 12 | 31 | 20 | – | – | |
| Phobius | 32 | 42 | 11 | – | – | |
| Phobius | 43 | 62 | 20 | – | – | |
| Phobius | 63 | 1427 | 1365 | – | – | |
| PANTHER | 101 | 967 | 867 | 6.90E-149 | ||
| MobiDBLite | 280 | 336 | 57 | – | – | |
| MobiDBLite | 374 | 435 | 62 | – | – | |
| MobiDBLite | 560 | 582 | 23 | – | – | |
| MobiDBLite | 613 | 639 | 27 | – | – | |
| MobiDBLite | 658 | 683 | 26 | – | – | |
| MobiDBLite | 706 | 966 | 261 | – | – | |
| MobiDBLite | 981 | 1010 | 30 | – | – | |
| PANTHER | 984 | 1426 | 443 | 6.90E-149 | ||
| MobiDBLite | 1040 | 1081 | 42 | – | – | |
| MobiDBLite | 1122 | 1209 | 88 | – | – | |
| MobiDBLite | 1254 | 1275 | 22 | – | – | |
| ProSiteProfiles | 1363 | 1381 | 19 | 7.657 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Cellular component | Cytoskeleton | Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles. | ||
| Biological process | Actin cytoskeleton organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. |
Expression pattern of Lj4g3v2604620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2604620.1, powered by CORGI.
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