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Lj4g3v2666320.2

Overview

Field Value
Gene ID Lj4g3v2666320
Transcript ID Lj4g3v2666320.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description SHOOT1 protein [Glycine max] gi|351722395|ref|NP_001235451.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR17130:SF24
4 321 318 2.30E-154 –
PANTHER
PTHR17130
4 321 318 2.30E-154 –
Gene3D
G3DSA:2.30.42.10
72 137 66 5.20E-07
IPR001478
SUPERFAMILY
SSF50156
95 137 43 2.66E-08
IPR001478
CDD
cd00136
99 137 39 1.59E-05 –
ProSiteProfiles
PS50106
100 139 40 9.149
IPR001478
ProSiteProfiles
PS50293
220 290 71 11.248
IPR013026
SUPERFAMILY
SSF48452
222 286 65 1.34E-08
IPR011990
Gene3D
G3DSA:1.25.40.10
223 285 63 9.80E-10
IPR011990

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 36

Expression data

Expression pattern

Expression pattern of Lj4g3v2666320.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2666320.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.