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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2668540 |
| Transcript ID | Lj4g3v2668540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cicer arietinum] gi|502153624|ref|XP_004509407.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 462 | 462 | 0 | – | |
| PANTHER | 1 | 462 | 462 | 0 | – | |
| SUPERFAMILY | 60 | 453 | 394 | 4.05E-06 | ||
| ProSiteProfiles | 81 | 115 | 35 | 11.794 | ||
| Pfam | 81 | 127 | 47 | 9.80E-12 | ||
| TIGRFAM | 83 | 116 | 34 | 5.80E-07 | ||
| ProSiteProfiles | 116 | 150 | 35 | 5.842 | ||
| ProSiteProfiles | 151 | 181 | 31 | 7.761 | ||
| ProSiteProfiles | 182 | 212 | 31 | 9.909 | ||
| Pfam | 182 | 231 | 50 | 1.50E-07 | ||
| TIGRFAM | 184 | 211 | 28 | 3.20E-05 | ||
| ProSiteProfiles | 219 | 253 | 35 | 5.93 | ||
| ProSiteProfiles | 254 | 284 | 31 | 6.029 | ||
| Pfam | 261 | 283 | 23 | 1.1 | ||
| ProSiteProfiles | 285 | 319 | 35 | 11.4 | ||
| Gene3D | 287 | 315 | 29 | 3.30E-05 | ||
| Pfam | 288 | 316 | 29 | 1.60E-05 | ||
| TIGRFAM | 288 | 320 | 33 | 1.70E-07 | ||
| ProSiteProfiles | 320 | 354 | 35 | 8.824 | ||
| Pfam | 322 | 352 | 31 | 0.077 | ||
| TIGRFAM | 323 | 352 | 30 | 0.0032 | ||
| ProSiteProfiles | 355 | 385 | 31 | 6.884 | ||
| Pfam | 359 | 382 | 24 | 0.71 | ||
| Gene3D | 368 | 451 | 84 | 1.40E-04 | ||
| ProSiteProfiles | 421 | 455 | 35 | 6.829 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2668540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2668540.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.