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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2788190 |
| Transcript ID | Lj4g3v2788190.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g39530-like [Glycine max] gi|356528519|ref|XP_003532850.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 654 | 654 | – | – | |
| PANTHER | 13 | 45 | 33 | 0 | – | |
| PANTHER | 13 | 45 | 33 | 0 | – | |
| PANTHER | 70 | 351 | 282 | 0 | – | |
| PANTHER | 70 | 351 | 282 | 0 | – | |
| ProSiteProfiles | 82 | 116 | 35 | 9.219 | ||
| Pfam | 87 | 113 | 27 | 0.0094 | ||
| Pfam | 115 | 143 | 29 | 2.80E-04 | ||
| ProSiteProfiles | 117 | 147 | 31 | 5.119 | ||
| ProSiteProfiles | 149 | 183 | 35 | 7.245 | ||
| ProSiteProfiles | 184 | 214 | 31 | 7.224 | ||
| Pfam | 189 | 210 | 22 | 0.029 | ||
| Pfam | 215 | 261 | 47 | 6.40E-09 | ||
| ProSiteProfiles | 215 | 249 | 35 | 11.192 | ||
| TIGRFAM | 217 | 250 | 34 | 8.60E-08 | ||
| ProSiteProfiles | 285 | 315 | 31 | 6.533 | ||
| Pfam | 315 | 362 | 48 | 1.00E-08 | ||
| ProSiteProfiles | 316 | 350 | 35 | 10.698 | ||
| TIGRFAM | 318 | 352 | 35 | 5.60E-06 | ||
| ProSiteProfiles | 351 | 385 | 35 | 5.536 | ||
| ProSiteProfiles | 386 | 416 | 31 | 7.125 | ||
| Pfam | 391 | 416 | 26 | 0.035 | ||
| ProSiteProfiles | 417 | 451 | 35 | 11.389 | ||
| PANTHER | 418 | 437 | 20 | 0 | – | |
| PANTHER | 418 | 437 | 20 | 0 | – | |
| Pfam | 419 | 445 | 27 | 3.90E-06 | ||
| TIGRFAM | 419 | 447 | 29 | 3.30E-05 | ||
| Gene3D | 420 | 444 | 25 | 1.00E-08 | ||
| ProSiteProfiles | 487 | 517 | 31 | 6.127 | ||
| PANTHER | 517 | 796 | 280 | 0 | – | |
| PANTHER | 517 | 796 | 280 | 0 | – | |
| Pfam | 517 | 563 | 47 | 1.10E-07 | ||
| ProSiteProfiles | 518 | 552 | 35 | 9.394 | ||
| ProSiteProfiles | 553 | 587 | 35 | 6.325 | ||
| Gene3D | 581 | 655 | 75 | 1.00E-08 | ||
| ProSiteProfiles | 588 | 618 | 31 | 7.794 | ||
| Pfam | 593 | 613 | 21 | 0.16 | ||
| Pfam | 618 | 666 | 49 | 7.40E-10 | ||
| ProSiteProfiles | 619 | 653 | 35 | 13.165 | ||
| TIGRFAM | 622 | 654 | 33 | 6.80E-09 | ||
| ProSiteProfiles | 654 | 688 | 35 | 8.298 | ||
| Phobius | 655 | 675 | 21 | – | – | |
| Phobius | 676 | 845 | 170 | – | – | |
| ProSiteProfiles | 689 | 723 | 35 | 6.95 | ||
| Pfam | 693 | 716 | 24 | 0.79 | ||
| Gene3D | 722 | 760 | 39 | 1.00E-08 | ||
| ProSiteProfiles | 755 | 789 | 35 | 6.971 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2788190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2788190.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.