Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2801750.1

Overview

Field	Value
Gene ID	Lj4g3v2801750
Transcript ID	Lj4g3v2801750.1
Lotus japonicus genome version	MG20 v3.0
Description	RING finger family protein [Medicago truncatula] gi\|357519591\|ref\|XP_003630084.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	11	11	–	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	7	29	23	–	–
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	12	33	22	–	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	34	183	150	–	–
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	89	139	51	1.70E-16	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR14155 View details on PTHR14155 Search for proteins/transripts with this domain View external data on PTHR14155	89	161	73	9.70E-25	–
PANTHER	PTHR14155:SF175 View details on PTHR14155:SF175 Search for proteins/transripts with this domain View external data on PTHR14155:SF175	89	161	73	9.70E-25	–
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	90	143	54	6.06E-19	–
Pfam	PF13639 View details on PF13639 Search for proteins/transripts with this domain View external data on PF13639	90	136	47	1.30E-11	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	90	139	50	2.16E-10	–
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	91	135	45	1.10E-05	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	91	136	46	12.829	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj4g3v2801750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2801750.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.