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Lj4g3v2803800.1

Overview

Field Value
Gene ID Lj4g3v2803800
Transcript ID Lj4g3v2803800.1
Lotus japonicus genome version MG20 v3.0
Description U-box domain-containing protein [Medicago truncatula] gi|357519575|ref|XP_003630076.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315:SF66
1 271 271 7.50E-305 –
PANTHER
PTHR23315
1 271 271 7.50E-305 –
SUPERFAMILY
SSF48371
22 355 334 5.76E-35
IPR016024
SMART
SM00185
50 92 43 13
IPR000225
CDD
cd00020
61 181 121 2.73E-08 –
Pfam
PF00514
61 91 31 1.90E-05
IPR000225
Gene3D
G3DSA:1.25.10.10
62 348 287 7.60E-48
IPR011989
SMART
SM00185
93 133 41 23
IPR000225
CDD
cd00020
191 286 96 1.79E-06 –
SMART
SM00185
225 266 42 8.4
IPR000225
Coils
Coil
254 274 21 – –
SMART
SM00185
268 317 50 7.4
IPR000225
PANTHER
PTHR23315:SF66
289 544 256 7.50E-305 –
PANTHER
PTHR23315
289 544 256 7.50E-305 –
SUPERFAMILY
SSF48371
370 579 210 1.68E-25
IPR016024
Gene3D
G3DSA:1.25.10.10
384 608 225 5.80E-37
IPR011989
CDD
cd00020
404 521 118 3.11E-05 –
SMART
SM00185
439 480 42 360
IPR000225
Pfam
PF00514
482 521 40 7.80E-05
IPR000225
SMART
SM00185
482 522 41 0.17
IPR000225
CDD
cd00020
488 594 107 2.60E-07 –
ProSiteProfiles
PS50176
493 535 43 9.222
IPR000225
SMART
SM00185
524 564 41 11
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj4g3v2803800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2803800.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.