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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2826730 |
| Transcript ID | Lj4g3v2826730.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] gi|356512860|ref|XP_003525133.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 392 | 392 | 2.30E-261 | ||
| PANTHER | 1 | 392 | 392 | 2.30E-261 | – | |
| Gene3D | 9 | 324 | 316 | 5.60E-103 | ||
| SUPERFAMILY | 17 | 66 | 50 | 1.60E-11 | ||
| ProSitePatterns | 22 | 32 | 11 | – | ||
| ProSiteProfiles | 36 | 87 | 52 | 14.484 | ||
| PRINTS | 37 | 53 | 17 | 8.90E-26 | ||
| Pfam | 38 | 83 | 46 | 4.00E-15 | ||
| Pfam | 88 | 137 | 50 | 3.30E-14 | ||
| ProSiteProfiles | 89 | 140 | 52 | 15.81 | ||
| PRINTS | 91 | 107 | 17 | 8.90E-26 | ||
| SUPERFAMILY | 140 | 379 | 240 | 1.96E-79 | ||
| Pfam | 140 | 189 | 50 | 1.20E-14 | ||
| PRINTS | 141 | 157 | 17 | 8.90E-26 | ||
| ProSiteProfiles | 141 | 192 | 52 | 16.554 | ||
| PRINTS | 179 | 195 | 17 | 8.90E-26 | ||
| ProSitePatterns | 179 | 189 | 11 | – | ||
| Pfam | 192 | 238 | 47 | 3.60E-14 | ||
| ProSiteProfiles | 193 | 243 | 51 | 15.851 | ||
| PRINTS | 195 | 209 | 15 | 8.90E-26 | ||
| ProSitePatterns | 230 | 240 | 11 | – | ||
| Pfam | 243 | 292 | 50 | 3.50E-12 | ||
| ProSiteProfiles | 244 | 295 | 52 | 13.218 | ||
| ProSitePatterns | 282 | 292 | 11 | – | ||
| PRINTS | 285 | 303 | 19 | 8.90E-26 | ||
| Pfam | 295 | 344 | 50 | 4.90E-14 | ||
| ProSiteProfiles | 296 | 347 | 52 | 14.645 | ||
| ProSitePatterns | 334 | 344 | 11 | – | ||
| PRINTS | 343 | 364 | 22 | 8.90E-26 | ||
| ProSiteProfiles | 348 | 406 | 59 | 11.73 | ||
| Pfam | 348 | 379 | 32 | 2.80E-09 | ||
| MobiDBLite | 385 | 434 | 50 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Photoreceptor activity | The function of absorbing and responding to incidental electromagnetic radiation, particularly visible light. The response may involve a change in conformation. | ||
| Biological process | Response to UV-B | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm. | ||
| Molecular function | Protein homodimerization activity | Interacting selectively and non-covalently with an identical protein to form a homodimer. |
Expression pattern of Lj4g3v2826730.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2826730.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.