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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2916480 |
| Transcript ID | Lj4g3v2916480.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g09040, mitochondrial-like [Glycine max] gi|356544234|ref|XP_003540559.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 57 | 87 | 31 | 7.629 | ||
| TIGRFAM | 63 | 90 | 28 | 4.30E-04 | ||
| PANTHER | 63 | 325 | 263 | 0 | – | |
| Gene3D | 63 | 119 | 57 | 9.00E-13 | ||
| PANTHER | 63 | 325 | 263 | 0 | – | |
| SUPERFAMILY | 69 | 158 | 90 | 3.45E-07 | ||
| ProSiteProfiles | 88 | 122 | 35 | 11.849 | ||
| Pfam | 88 | 132 | 45 | 3.00E-10 | ||
| TIGRFAM | 92 | 121 | 30 | 9.40E-07 | ||
| ProSiteProfiles | 123 | 157 | 35 | 5.272 | ||
| ProSiteProfiles | 158 | 188 | 31 | 7.125 | ||
| Pfam | 163 | 186 | 24 | 0.11 | ||
| Pfam | 188 | 235 | 48 | 6.80E-12 | ||
| ProSiteProfiles | 189 | 223 | 35 | 11.082 | ||
| TIGRFAM | 191 | 225 | 35 | 2.20E-06 | ||
| ProSiteProfiles | 224 | 258 | 35 | 6.029 | ||
| Gene3D | 257 | 307 | 51 | 9.00E-13 | ||
| ProSiteProfiles | 259 | 289 | 31 | 9.405 | ||
| Pfam | 264 | 289 | 26 | 9.30E-04 | ||
| ProSiteProfiles | 290 | 324 | 35 | 10.052 | ||
| Pfam | 292 | 319 | 28 | 0.011 | ||
| TIGRFAM | 292 | 326 | 35 | 3.60E-04 | ||
| ProSiteProfiles | 325 | 359 | 35 | 5.963 | ||
| ProSiteProfiles | 360 | 394 | 35 | 8.681 | ||
| PANTHER | 361 | 380 | 20 | 0 | – | |
| PANTHER | 361 | 380 | 20 | 0 | – | |
| Pfam | 365 | 390 | 26 | 0.094 | ||
| PANTHER | 492 | 773 | 282 | 0 | – | |
| PANTHER | 492 | 773 | 282 | 0 | – | |
| ProSiteProfiles | 493 | 527 | 35 | 10.446 | ||
| Pfam | 495 | 540 | 46 | 2.20E-10 | ||
| TIGRFAM | 495 | 528 | 34 | 1.10E-06 | ||
| ProSiteProfiles | 528 | 562 | 35 | 5.919 | ||
| SUPERFAMILY | 554 | 629 | 76 | 3.45E-07 | ||
| ProSiteProfiles | 563 | 593 | 31 | 8.155 | ||
| Gene3D | 566 | 626 | 61 | 9.00E-13 | ||
| Pfam | 568 | 590 | 23 | 0.0089 | ||
| Pfam | 594 | 641 | 48 | 1.60E-12 | ||
| ProSiteProfiles | 595 | 629 | 35 | 12.923 | ||
| TIGRFAM | 597 | 630 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 630 | 665 | 36 | 7.015 | ||
| SUPERFAMILY | 665 | 757 | 93 | 3.45E-07 | ||
| ProSiteProfiles | 666 | 696 | 31 | 5.81 | ||
| Gene3D | 696 | 758 | 63 | 9.00E-13 | ||
| ProSiteProfiles | 732 | 766 | 35 | 7.794 | ||
| Coils | 820 | 822 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2916480.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2916480.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.