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Lj4g3v2917670.1

Overview

Field Value
Gene ID Lj4g3v2917670
Transcript ID Lj4g3v2917670.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48-like [Cicer arietinum] gi|502139411|ref|XP_004503757.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 424 424 – –
MobiDBLite
mobidb-lite
1 35 35 – –
MobiDBLite
mobidb-lite
65 107 43 – –
PANTHER
PTHR24031
119 634 516 0 –
PANTHER
PTHR24031:SF324
119 634 516 0 –
Gene3D
G3DSA:3.40.50.300
157 387 231 3.20E-65
IPR027417
ProSiteProfiles
PS51195
166 194 29 9.905
IPR014014
CDD
cd00268
168 375 208 6.95E-75 –
SMART
SM00487
185 396 212 7.50E-48
IPR014001
Pfam
PF00270
190 368 179 5.30E-42
IPR011545
ProSiteProfiles
PS51192
197 380 184 28.541
IPR014001
SUPERFAMILY
SSF52540
243 536 294 2.27E-60
IPR027417
Gene3D
G3DSA:3.40.50.300
388 554 167 2.30E-34
IPR027417
Pfam
PF00271
413 519 107 3.30E-18
IPR001650
ProSiteProfiles
PS51194
414 564 151 17.097
IPR001650
CDD
cd00079
414 527 114 6.10E-23 –
Phobius
TRANSMEMBRANE
425 444 20 – –
SMART
SM00490
438 519 82 2.20E-21
IPR001650
Phobius
CYTOPLASMIC_DOMAIN
445 635 191 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v2917670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2917670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.