Transcript — View — Lotus Base

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2928710.2

Overview

Field	Value
Gene ID	Lj4g3v2928710
Transcript ID	Lj4g3v2928710.2
Related isoforms 2	Lj4g3v2928710.1 Lj4g3v2928710.3
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: bromodomain testis-specific protein-like [Cicer arietinum] gi\|502139419\|ref\|XP_004503759.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR23270 View details on PTHR23270 Search for proteins/transripts with this domain View external data on PTHR23270	314	737	424	1.70E-238	–
PANTHER	PTHR23270:SF7 View details on PTHR23270:SF7 Search for proteins/transripts with this domain View external data on PTHR23270:SF7	314	737	424	1.70E-238	–
SMART	SM00316 View details on SM00316 Search for proteins/transripts with this domain View external data on SM00316	393	532	140	55	IPR022967 Show description in modal box View details on IPR022967 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF50249 View details on SSF50249 Search for proteins/transripts with this domain View external data on SSF50249	538	644	107	9.29E-20	IPR012340 Show description in modal box View details on IPR012340 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.40.50.140 View details on G3DSA:2.40.50.140 Search for proteins/transripts with this domain View external data on G3DSA:2.40.50.140	545	631	87	2.60E-20	–
Pfam	PF00575 View details on PF00575 Search for proteins/transripts with this domain View external data on PF00575	549	621	73	4.40E-12	IPR003029 Show description in modal box View details on IPR003029 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00316 View details on SM00316 Search for proteins/transripts with this domain View external data on SM00316	551	621	71	1.80E-18	IPR022967 Show description in modal box View details on IPR022967 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50126 View details on PS50126 Search for proteins/transripts with this domain View external data on PS50126	553	621	69	16.624	IPR003029 Show description in modal box View details on IPR003029 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003676 View details of GO:0003676 AmiGO InterPro QuickGO	Molecular function	Nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.	Subterm of View details of GO:0097159 View details of GO:1901363

Genome browser

LORE1 insertions 31

Expression data

Expression pattern

Expression pattern of Lj4g3v2928710.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2928710.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.