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Lj4g3v2949790.1

Overview

Field Value
Gene ID Lj4g3v2949790
Transcript ID Lj4g3v2949790.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 6-like [Glycine max] gi|356525144|ref|XP_003531187.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22849:SF8
1 24 24 0 –
PANTHER
PTHR22849
1 24 24 0 –
MobiDBLite
mobidb-lite
10 39 30 – –
PANTHER
PTHR22849:SF8
58 556 499 0 –
PANTHER
PTHR22849
58 556 499 0 –
SUPERFAMILY
SSF57850
62 145 84 6.18E-29 –
ProSiteProfiles
PS51698
69 143 75 40.232
IPR003613
Gene3D
G3DSA:3.30.40.10
70 141 72 6.00E-31
IPR013083
Pfam
PF04564
71 140 70 1.50E-18
IPR003613
SMART
SM00504
73 136 64 3.20E-32
IPR003613
Gene3D
G3DSA:1.25.10.10
210 498 289 3.00E-43
IPR011989
CDD
cd00020
219 329 111 9.69E-07 –
SUPERFAMILY
SSF48371
221 498 278 8.47E-33
IPR016024
SMART
SM00185
246 290 45 3.6
IPR000225
ProSiteProfiles
PS50176
257 303 47 9.397
IPR000225
SMART
SM00185
292 330 39 160
IPR000225
CDD
cd00020
297 414 118 4.12E-05 –
SMART
SM00185
331 372 42 73
IPR000225
SMART
SM00185
415 456 42 49
IPR000225
CDD
cd00020
421 475 55 5.71E-06 –
MobiDBLite
mobidb-lite
502 524 23 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj4g3v2949790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2949790.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.