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Lj4g3v3015080.1

Overview

Field Value
Gene ID Lj4g3v3015080
Transcript ID Lj4g3v3015080.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description ABC transporter I family member [Medicago truncatula] gi|357520651|ref|XP_003630614.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
Gene3D
G3DSA:3.40.50.300
46 281 236 4.50E-42
IPR027417
SUPERFAMILY
SSF52540
48 281 234 2.39E-39
IPR027417
ProSiteProfiles
PS50893
50 296 247 16.427
IPR003439
TIGRFAM
TIGR01978
50 293 244 2.20E-91
IPR010230
CDD
cd03217
50 291 242 5.46E-101
IPR010230
PANTHER
PTHR24220:SF85
51 291 241 1.10E-106 –
PANTHER
PTHR24220
51 291 241 1.10E-106 –
Pfam
PF00005
67 221 155 4.80E-19
IPR003439
SMART
SM00382
76 264 189 1.40E-06
IPR003593
ProSitePatterns
PS00211
196 210 15 –
IPR017871

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj4g3v3015080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3015080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.