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Lj4g3v3015270.1

Overview

Field Value
Gene ID Lj4g3v3015270
Transcript ID Lj4g3v3015270.1
Lotus japonicus genome version MG20 v3.0
Description Cytidine deaminase [Medicago truncatula] gi|357520685|ref|XP_003630631.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF006334
1 289 289 1.40E-98
IPR006263
TIGRFAM
TIGR01355
6 286 281 9.40E-106
IPR006263
Gene3D
G3DSA:3.40.140.10
15 145 131 6.70E-36 –
SUPERFAMILY
SSF53927
16 119 104 1.58E-27
IPR016193
ProSiteProfiles
PS51747
19 142 124 20.697
IPR002125
PANTHER
PTHR11644
22 287 266 2.60E-136 –
PANTHER
PTHR11644:SF2
22 287 266 2.60E-136 –
Pfam
PF00383
30 111 82 6.20E-11
IPR002125
CDD
cd01283
30 129 100 1.38E-20 –
ProSitePatterns
PS00903
73 107 35 –
IPR016192
SUPERFAMILY
SSF53927
128 275 148 2.26E-26
IPR016193
Pfam
PF08211
131 269 139 1.30E-48
IPR013171
ProSiteProfiles
PS51747
177 294 118 22.713
IPR002125
Gene3D
G3DSA:3.40.140.10
177 281 105 2.60E-20 –
CDD
cd01283
183 250 68 3.65E-12 –
Coils
Coil
288 294 7 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004126
Molecular function Cytidine deaminase activity Catalysis of the reaction: cytidine + H2O = uridine + NH3.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0009972
Biological process Cytidine deamination The removal of amino group in the presence of water.
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v3015270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3015270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.