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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3113150 |
| Transcript ID | Lj4g3v3113150.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin protein ligase RIE1-like isoform 2 [Glycine max] gi|356513054|ref|XP_003525229.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 60 | 60 | – | – | |
| PANTHER | 6 | 256 | 251 | 1.90E-207 | – | |
| PANTHER | 6 | 256 | 251 | 1.90E-207 | – | |
| TMHMM | 60 | 82 | 23 | – | – | |
| Phobius | 61 | 80 | 20 | – | – | |
| Phobius | 81 | 91 | 11 | – | – | |
| TMHMM | 92 | 114 | 23 | – | – | |
| Phobius | 92 | 112 | 21 | – | – | |
| Phobius | 113 | 159 | 47 | – | – | |
| MobiDBLite | 125 | 148 | 24 | – | – | |
| TMHMM | 159 | 181 | 23 | – | – | |
| Phobius | 160 | 179 | 20 | – | – | |
| Phobius | 180 | 190 | 11 | – | – | |
| Phobius | 191 | 209 | 19 | – | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 210 | 215 | 6 | – | – | |
| TMHMM | 215 | 237 | 23 | – | – | |
| Phobius | 216 | 236 | 21 | – | – | |
| Phobius | 237 | 344 | 108 | – | – | |
| PANTHER | 282 | 344 | 63 | 1.90E-207 | – | |
| PANTHER | 282 | 344 | 63 | 1.90E-207 | – | |
| SUPERFAMILY | 284 | 338 | 55 | 2.20E-19 | – | |
| Gene3D | 289 | 337 | 49 | 5.30E-17 | ||
| CDD | 292 | 337 | 46 | 6.44E-09 | – | |
| Pfam | 292 | 334 | 43 | 6.70E-13 | ||
| ProSiteProfiles | 293 | 334 | 42 | 12.548 | ||
| SMART | 293 | 333 | 41 | 1.20E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj4g3v3113150.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3113150.1, powered by CORGI.
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