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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3113310 |
| Transcript ID | Lj4g3v3113310.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357521373|ref|XP_003630975.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 159 | 141 | 0 | – | |
| PANTHER | 19 | 159 | 141 | 0 | – | |
| ProSiteProfiles | 75 | 109 | 35 | 8.188 | ||
| Pfam | 78 | 107 | 30 | 0.47 | ||
| ProSiteProfiles | 145 | 182 | 38 | 6.785 | ||
| PANTHER | 184 | 580 | 397 | 0 | – | |
| PANTHER | 184 | 580 | 397 | 0 | – | |
| ProSiteProfiles | 200 | 234 | 35 | 11.466 | ||
| Pfam | 200 | 243 | 44 | 7.00E-10 | ||
| TIGRFAM | 202 | 236 | 35 | 3.50E-06 | ||
| ProSiteProfiles | 235 | 269 | 35 | 5.689 | ||
| ProSiteProfiles | 270 | 300 | 31 | 5.842 | ||
| Gene3D | 300 | 448 | 149 | 1.50E-07 | ||
| Pfam | 301 | 348 | 48 | 4.10E-08 | ||
| ProSiteProfiles | 301 | 335 | 35 | 12.211 | ||
| TIGRFAM | 303 | 335 | 33 | 4.20E-07 | ||
| SUPERFAMILY | 313 | 341 | 29 | 4.02E-07 | ||
| ProSiteProfiles | 371 | 401 | 31 | 7.267 | ||
| Pfam | 376 | 401 | 26 | 0.068 | ||
| SUPERFAMILY | 378 | 561 | 184 | 4.02E-07 | ||
| ProSiteProfiles | 402 | 436 | 35 | 11.466 | ||
| Pfam | 404 | 434 | 31 | 2.80E-06 | ||
| TIGRFAM | 404 | 436 | 33 | 5.00E-05 | ||
| ProSiteProfiles | 437 | 467 | 31 | 7.07 | ||
| Pfam | 439 | 466 | 28 | 0.017 | ||
| TIGRFAM | 440 | 467 | 28 | 0.0027 | ||
| ProSiteProfiles | 473 | 503 | 31 | 6.16 | ||
| Gene3D | 504 | 560 | 57 | 1.50E-07 | ||
| ProSiteProfiles | 505 | 535 | 31 | 5.218 | ||
| ProSiteProfiles | 539 | 573 | 35 | 7.892 | ||
| Pfam | 576 | 698 | 123 | 4.20E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v3113310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3113310.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.