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Lj5g3v0107120.1

Overview

Field Value
Gene ID Lj5g3v0107120
Transcript ID Lj5g3v0107120.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Cicer arietinum] gi|502126064|ref|XP_004499166.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
220 248 29 – –
PANTHER
PTHR24015:SF515
301 685 385 2.50E-159 –
PANTHER
PTHR24015
301 685 385 2.50E-159 –
Gene3D
G3DSA:1.25.40.10
367 571 205 2.60E-06
IPR011990
ProSiteProfiles
PS51375
367 401 35 8.44
IPR002885
Pfam
PF01535
374 398 25 0.25
IPR002885
ProSiteProfiles
PS51375
402 436 35 11.17
IPR002885
TIGRFAM
TIGR00756
406 438 33 2.60E-04
IPR002885
Pfam
PF13812
429 486 58 3.60E-08
IPR002885
ProSiteProfiles
PS51375
437 471 35 10.26
IPR002885
TIGRFAM
TIGR00756
440 473 34 1.40E-06
IPR002885
ProSiteProfiles
PS51375
473 507 35 7.081
IPR002885
ProSiteProfiles
PS51375
508 542 35 10.271
IPR002885
Pfam
PF01535
511 539 29 0.15
IPR002885
TIGRFAM
TIGR00756
511 543 33 1.40E-04
IPR002885
ProSiteProfiles
PS51375
543 577 35 8.396
IPR002885
Pfam
PF01535
549 575 27 0.39
IPR002885
ProSiteProfiles
PS51375
578 612 35 8.068
IPR002885
Pfam
PF01535
581 605 25 0.18
IPR002885
ProSiteProfiles
PS51375
648 682 35 6.489
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj5g3v0107120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0107120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.