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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0254340 |
| Transcript ID | Lj5g3v0254340.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-dependent protein kinase 29-like isoform 1 [Glycine max] gi|356553337|ref|XP_003545013.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 23 | 23 | – | – | |
| Phobius | 3 | 14 | 12 | – | – | |
| PANTHER | 13 | 520 | 508 | 0 | – | |
| PANTHER | 13 | 520 | 508 | 0 | – | |
| Phobius | 15 | 23 | 9 | – | – | |
| MobiDBLite | 21 | 56 | 36 | – | – | |
| Phobius | 24 | 523 | 500 | – | – | |
| Gene3D | 70 | 169 | 100 | 1.90E-32 | – | |
| SUPERFAMILY | 70 | 337 | 268 | 7.28E-84 | ||
| SMART | 72 | 330 | 259 | 4.20E-98 | ||
| CDD | 72 | 329 | 258 | 6.60E-134 | – | |
| ProSiteProfiles | 72 | 330 | 259 | 47.481 | ||
| Pfam | 72 | 330 | 259 | 1.20E-73 | ||
| ProSitePatterns | 78 | 101 | 24 | – | ||
| Gene3D | 170 | 346 | 177 | 5.60E-60 | – | |
| ProSitePatterns | 192 | 204 | 13 | – | ||
| Gene3D | 359 | 517 | 159 | 2.30E-47 | ||
| SUPERFAMILY | 369 | 510 | 142 | 1.37E-47 | ||
| ProSiteProfiles | 373 | 408 | 36 | 15.601 | ||
| SMART | 377 | 405 | 29 | 6.40E-06 | ||
| Pfam | 378 | 438 | 61 | 5.90E-12 | ||
| CDD | 378 | 437 | 60 | 6.00E-17 | ||
| ProSitePatterns | 386 | 398 | 13 | – | ||
| ProSiteProfiles | 409 | 444 | 36 | 11.584 | ||
| SMART | 413 | 441 | 29 | 0.0024 | ||
| ProSitePatterns | 422 | 434 | 13 | – | ||
| ProSiteProfiles | 445 | 480 | 36 | 14.709 | ||
| Pfam | 448 | 510 | 63 | 6.60E-14 | ||
| SMART | 449 | 477 | 29 | 8.00E-04 | ||
| CDD | 450 | 510 | 61 | 2.32E-17 | ||
| ProSitePatterns | 458 | 470 | 13 | – | ||
| ProSiteProfiles | 481 | 515 | 35 | 12.589 | ||
| SMART | 484 | 512 | 29 | 9.60E-07 | ||
| ProSitePatterns | 493 | 505 | 13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of Lj5g3v0254340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0254340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.