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Lj5g3v0391500.1

Overview

Field Value
Gene ID Lj5g3v0391500
Transcript ID Lj5g3v0391500.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: nucleolar GTP-binding protein 2-like [Glycine max] gi|356544026|ref|XP_003540457.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 34 34 – –
PANTHER
PTHR11089:SF9
15 469 455 1.70E-280
IPR024929
PANTHER
PTHR11089
15 469 455 1.70E-280 –
Pfam
PF08153
43 168 126 1.20E-45
IPR012971
SUPERFAMILY
SSF52540
201 436 236 1.58E-38
IPR027417
Gene3D
G3DSA:3.40.50.300
205 364 160 9.20E-36
IPR027417
ProSiteProfiles
PS51721
205 366 162 36.612
IPR030378
CDD
cd01858
207 363 157 1.12E-116 –
Pfam
PF01926
311 397 87 9.50E-15
IPR006073
PRINTS
PR00326
311 331 21 1.20E-05
IPR006073
PRINTS
PR00326
357 372 16 1.20E-05
IPR006073
Gene3D
G3DSA:1.10.1580.10
382 454 73 1.70E-09
IPR023179

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0005730
Cellular component Nucleolus A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
Subterm of
Part of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj5g3v0391500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0391500.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.