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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0539750 |
| Transcript ID | Lj5g3v0539750.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357436955|ref|XP_003588753.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 250 | 250 | 7.70E-170 | – | |
| PANTHER | 1 | 250 | 250 | 7.70E-170 | – | |
| ProSiteProfiles | 6 | 40 | 35 | 5.185 | ||
| Gene3D | 38 | 109 | 72 | 2.80E-05 | ||
| ProSiteProfiles | 41 | 71 | 31 | 9.591 | ||
| TIGRFAM | 44 | 70 | 27 | 5.40E-06 | ||
| Pfam | 45 | 68 | 24 | 3.00E-06 | ||
| ProSiteProfiles | 72 | 106 | 35 | 11.915 | ||
| Pfam | 73 | 120 | 48 | 5.10E-12 | ||
| TIGRFAM | 74 | 107 | 34 | 6.20E-09 | ||
| ProSiteProfiles | 107 | 137 | 31 | 7.07 | ||
| TIGRFAM | 110 | 142 | 33 | 5.00E-04 | ||
| ProSiteProfiles | 143 | 173 | 31 | 6.752 | ||
| Pfam | 146 | 170 | 25 | 0.06 | ||
| ProSiteProfiles | 175 | 205 | 31 | 5.864 | ||
| Gene3D | 177 | 228 | 52 | 2.80E-05 | ||
| ProSiteProfiles | 209 | 243 | 35 | 6.588 | ||
| Pfam | 245 | 369 | 125 | 1.90E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v0539750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0539750.1, powered by CORGI.
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