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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0539760 |
| Transcript ID | Lj5g3v0539760.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cicer arietinum] gi|502124763|ref|XP_004498663.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 11 | 11 | – | – | |
| PANTHER | 4 | 30 | 27 | 1.00E-258 | – | |
| PANTHER | 4 | 30 | 27 | 1.00E-258 | – | |
| PANTHER | 49 | 498 | 450 | 1.00E-258 | – | |
| PANTHER | 49 | 498 | 450 | 1.00E-258 | – | |
| ProSiteProfiles | 106 | 141 | 36 | 9.624 | ||
| ProSiteProfiles | 142 | 176 | 35 | 5.908 | ||
| ProSiteProfiles | 219 | 253 | 35 | 12.485 | ||
| Pfam | 219 | 266 | 48 | 5.40E-11 | ||
| TIGRFAM | 221 | 255 | 35 | 2.30E-08 | ||
| ProSiteProfiles | 254 | 288 | 35 | 5.185 | ||
| Gene3D | 285 | 357 | 73 | 6.30E-05 | ||
| ProSiteProfiles | 289 | 319 | 31 | 9.591 | ||
| TIGRFAM | 292 | 318 | 27 | 1.00E-05 | ||
| Pfam | 293 | 316 | 24 | 7.80E-06 | ||
| ProSiteProfiles | 320 | 354 | 35 | 11.915 | ||
| Pfam | 321 | 368 | 48 | 1.00E-11 | ||
| TIGRFAM | 322 | 355 | 34 | 1.20E-08 | ||
| ProSiteProfiles | 355 | 385 | 31 | 7.07 | ||
| TIGRFAM | 358 | 390 | 33 | 9.50E-04 | ||
| ProSiteProfiles | 391 | 421 | 31 | 6.752 | ||
| Pfam | 394 | 418 | 25 | 0.11 | ||
| ProSiteProfiles | 423 | 453 | 31 | 5.864 | ||
| Gene3D | 425 | 476 | 52 | 6.30E-05 | ||
| ProSiteProfiles | 457 | 491 | 35 | 6.588 | ||
| Pfam | 493 | 617 | 125 | 4.70E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v0539760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0539760.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.