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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0615470 |
| Transcript ID | Lj5g3v0615470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g37310-like [Cicer arietinum] gi|502121778|ref|XP_004497438.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 509 | 509 | 0 | – | |
| PANTHER | 1 | 509 | 509 | 0 | – | |
| ProSiteProfiles | 1 | 28 | 28 | 6.16 | ||
| ProSiteProfiles | 66 | 96 | 31 | 8.934 | ||
| TIGRFAM | 71 | 97 | 27 | 2.20E-04 | ||
| Pfam | 71 | 96 | 26 | 0.0033 | ||
| ProSiteProfiles | 97 | 131 | 35 | 11.224 | ||
| Pfam | 97 | 144 | 48 | 2.10E-08 | ||
| TIGRFAM | 99 | 133 | 35 | 4.20E-06 | ||
| ProSiteProfiles | 133 | 167 | 35 | 6.697 | ||
| ProSiteProfiles | 168 | 202 | 35 | 9.821 | ||
| TIGRFAM | 172 | 198 | 27 | 1.30E-04 | ||
| Pfam | 172 | 198 | 27 | 9.70E-05 | ||
| Gene3D | 179 | 198 | 20 | 4.90E-06 | ||
| Pfam | 201 | 228 | 28 | 0.0045 | ||
| TIGRFAM | 201 | 227 | 27 | 0.0027 | ||
| ProSiteProfiles | 230 | 264 | 35 | 11.093 | ||
| Pfam | 233 | 269 | 37 | 1.70E-08 | ||
| TIGRFAM | 233 | 266 | 34 | 1.40E-08 | ||
| SUPERFAMILY | 284 | 467 | 184 | 2.07E-06 | ||
| Gene3D | 297 | 361 | 65 | 4.90E-06 | ||
| ProSiteProfiles | 300 | 330 | 31 | 7.235 | ||
| Pfam | 305 | 330 | 26 | 0.73 | ||
| ProSiteProfiles | 331 | 365 | 35 | 10.808 | ||
| Pfam | 332 | 378 | 47 | 2.50E-09 | ||
| TIGRFAM | 333 | 366 | 34 | 4.10E-06 | ||
| ProSiteProfiles | 366 | 401 | 36 | 9.482 | ||
| TIGRFAM | 368 | 401 | 34 | 3.20E-05 | ||
| ProSiteProfiles | 402 | 432 | 31 | 6.358 | ||
| Pfam | 406 | 429 | 24 | 0.35 | ||
| Gene3D | 465 | 494 | 30 | 4.90E-06 | ||
| ProSiteProfiles | 468 | 502 | 35 | 8.484 | ||
| Pfam | 472 | 500 | 29 | 0.0049 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v0615470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0615470.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.