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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0841000 |
| Transcript ID | Lj5g3v0841000.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: syntaxin-121-like [Cicer arietinum] gi|502122236|ref|XP_004497646.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 285 | 285 | – | – | |
| PANTHER | 1 | 316 | 316 | 1.20E-209 | – | |
| MobiDBLite | 1 | 22 | 22 | – | – | |
| PANTHER | 1 | 316 | 316 | 1.20E-209 | – | |
| SMART | 39 | 165 | 127 | 3.20E-41 | ||
| Gene3D | 43 | 172 | 130 | 2.60E-17 | – | |
| SUPERFAMILY | 43 | 269 | 227 | 3.65E-44 | ||
| CDD | 44 | 201 | 158 | 6.77E-41 | – | |
| Pfam | 44 | 249 | 206 | 2.40E-69 | ||
| Coils | 51 | 74 | 24 | – | – | |
| SMART | 209 | 276 | 68 | 1.50E-13 | ||
| Gene3D | 211 | 306 | 96 | 1.20E-30 | – | |
| CDD | 213 | 275 | 63 | 9.54E-24 | – | |
| ProSiteProfiles | 214 | 276 | 63 | 17.194 | ||
| Pfam | 250 | 302 | 53 | 3.60E-19 | ||
| Phobius | 286 | 306 | 21 | – | – | |
| TMHMM | 286 | 305 | 20 | – | – | |
| Phobius | 307 | 338 | 32 | – | – | |
| MobiDBLite | 312 | 338 | 27 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of Lj5g3v0841000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0841000.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.