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Lj5g3v0921030.1

Overview

Field Value
Gene ID Lj5g3v0921030
Transcript ID Lj5g3v0921030.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: zinc finger CCCH domain-containing protein 14-like [Glycine max] gi|356504859|ref|XP_003521212.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00356
32 59 28 0.54
IPR000571
ProSiteProfiles
PS50103
32 60 29 12.371
IPR000571
SUPERFAMILY
SSF90229
33 59 27 1.44E-05
IPR000571
Pfam
PF00642
34 58 25 2.90E-04
IPR000571
Gene3D
G3DSA:4.10.1000.10
34 58 25 4.50E-07
IPR000571
PANTHER
PTHR10288
38 254 217 5.60E-83 –
PANTHER
PTHR10288:SF154
38 254 217 5.60E-83 –
SUPERFAMILY
SSF54791
108 188 81 3.21E-15
IPR004088
SMART
SM00322
118 188 71 3.20E-11
IPR004087
Gene3D
G3DSA:3.30.1370.10
119 187 69 5.70E-16
IPR004088
ProSiteProfiles
PS50084
119 183 65 14.571
IPR004088
CDD
cd00105
123 183 61 2.28E-13 –
Pfam
PF00013
123 185 63 1.10E-12
IPR004088
MobiDBLite
mobidb-lite
198 217 20 – –
Gene3D
G3DSA:4.10.1000.10
221 254 34 8.70E-15
IPR000571
SUPERFAMILY
SSF90229
222 253 32 2.22E-08
IPR000571
ProSiteProfiles
PS50103
223 250 28 16.408
IPR000571
SMART
SM00356
223 249 27 1.30E-07
IPR000571
Pfam
PF00642
224 248 25 2.10E-09
IPR000571

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

LORE1 insertions 26

Expression data

Expression pattern

Expression pattern of Lj5g3v0921030.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0921030.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.