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Lj5g3v0962640.1

Overview

Field Value
Gene ID Lj5g3v0962640
Transcript ID Lj5g3v0962640.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribonuclease 3-like protein 2-like [Cicer arietinum] gi|502099207|ref|XP_004491416.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF69065
3 166 164 9.24E-39
IPR000999
PANTHER
PTHR14950
4 238 235 6.00E-118 –
PANTHER
PTHR14950:SF22
4 238 235 6.00E-118 –
ProSiteProfiles
PS50142
5 147 143 33.394
IPR000999
Gene3D
G3DSA:1.10.1520.10
5 166 162 7.20E-45
IPR000999
SMART
SM00535
20 170 151 1.70E-30
IPR000999
CDD
cd00593
20 170 151 2.06E-37
IPR000999
Pfam
PF00636
38 147 110 3.00E-20
IPR000999
SUPERFAMILY
SSF54768
129 236 108 7.61E-09 –
ProSiteProfiles
PS50137
175 238 64 8.761
IPR014720

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004525
Molecular function Ribonuclease III activity Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v0962640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0962640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.