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Lj5g3v1016990.1

Overview

Field Value
Gene ID Lj5g3v1016990
Transcript ID Lj5g3v1016990.1
Lotus japonicus genome version MG20 v3.0
Description histone H1.2 [Arabidopsis thaliana] gi|334184589|ref|NP_001189643.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11467
5 182 178 1.00E-64 –
PANTHER
PTHR11467:SF54
5 182 178 1.00E-64 –
Gene3D
G3DSA:1.10.10.10
6 83 78 3.20E-28
IPR011991
CDD
cd00073
7 83 77 1.60E-17 –
SUPERFAMILY
SSF46785
7 90 84 7.07E-25
IPR011991
SMART
SM00526
7 73 67 1.00E-34
IPR005818
ProSiteProfiles
PS51504
9 78 70 32.963
IPR005818
Pfam
PF00538
10 76 67 1.10E-20
IPR005818
PRINTS
PR00624
23 40 18 5.50E-05
IPR005819
PRINTS
PR00624
100 114 15 5.50E-05
IPR005819
MobiDBLite
mobidb-lite
104 182 79 – –
PRINTS
PR00624
131 148 18 5.50E-05
IPR005819
PRINTS
PR00624
153 172 20 5.50E-05
IPR005819

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj5g3v1016990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1016990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.