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PR00624

Source: PRINTS

Description

Histone H5 signature

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006334
Biological process Nucleosome assembly The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Subterm of
Part of

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj2g3v0677970.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
16
Lj4g3v3114650.1
– HMG I/Y like protein [Glycine max] gi|351723585|ref|NP_001236260.1|
Domains
17
Lj5g3v1016990.1
– Histone H1.2 [Arabidopsis thaliana] gi|334184589|ref|NP_001189643.1|
Domains
13
Lj5g3v1381570.1
–
Domains
13
Lj5g3v1381580.1
– Histone H1 [Pisum sativum] gi|556345|gb|AAA50303.1|
Domains
13
LotjaGi1g1v0712500_LC.1
– Histone H1; TAIR: AT2G30620.2 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P08283|H1_PEA Histone H1; TrEMBL-Plants: tr|A0A078GVX6|A0A078GVX6_BRANA BnaA04g17710D protein; Found in the gene: LotjaGi1g1v0712500_LC
Domains
14
LotjaGi2g1v0260700_LC.1
– Unknown protein; TrEMBL-Plants: tr|J3MXE7|J3MXE7_ORYBR Uncharacterized protein; Found in the gene: LotjaGi2g1v0260700_LC
Domains
11
LotjaGi2g1v0382800.1
– Histone H1; TAIR: AT2G18050.1 histone H1-3; Swiss-Prot: sp|P40267|H1_SOLPN Histone H1; TrEMBL-Plants: tr|I3S1P0|I3S1P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0382800
Domains
14
LotjaGi3g1v0293500_LC.2
– S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; TAIR: AT5G55920.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Found in the gene: LotjaGi3g1v0293500_LC
Domains
4
LotjaGi4g1v0463300.1
– Histone H1; TAIR: AT3G18035.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q9FYS5|HMGYA_MAIZE HMG-Y-related protein A; TrEMBL-Plants: tr|Q93YH8|Q93YH8_SOYBN HMG I/Y like protein; Found in the gene: LotjaGi4g1v0463300
Domains
17
LotjaGi5g1v0176500_LC.1
– Histone H1; TAIR: AT2G30620.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P26569|H12_ARATH Histone H1.2; TrEMBL-Plants: tr|D7LC70|D7LC70_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0176500_LC
Domains
14
LotjaGi5g1v0211600_LC.1
– Histone H1; TAIR: AT2G30620.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|P26569|H12_ARATH Histone H1.2; TrEMBL-Plants: tr|I1LBM9|I1LBM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0211600_LC
Domains
14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 8.33