Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1027080.1

Overview

Field Value
Gene ID Lj5g3v1027080
Transcript ID Lj5g3v1027080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: poly(rC)-binding protein 1-like [Glycine max] gi|356536806|ref|XP_003536925.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 138 138 – –
PANTHER
PTHR10288
53 93 41 3.40E-264 –
PANTHER
PTHR10288:SF155
53 93 41 3.40E-264 –
PANTHER
PTHR10288
110 550 441 3.40E-264 –
PANTHER
PTHR10288:SF155
110 550 441 3.40E-264 –
SUPERFAMILY
SSF54791
140 203 64 3.45E-14
IPR004088
Gene3D
G3DSA:3.30.1370.10
140 203 64 5.90E-19
IPR004088
SMART
SM00322
147 217 71 1.30E-08
IPR004087
ProSiteProfiles
PS50084
148 215 68 14.948
IPR004088
CDD
cd02396
150 219 70 7.90E-18 –
Pfam
PF00013
151 203 53 3.80E-13
IPR004088
SUPERFAMILY
SSF54791
231 320 90 1.46E-12
IPR004088
Gene3D
G3DSA:3.30.1370.10
237 313 77 3.30E-14
IPR004088
SMART
SM00322
237 312 76 8.20E-12
IPR004087
ProSiteProfiles
PS50084
238 307 70 14.613
IPR004088
Pfam
PF00013
241 307 67 1.70E-12
IPR004088
CDD
cd02396
242 308 67 4.27E-15 –
MobiDBLite
mobidb-lite
340 377 38 – –
SUPERFAMILY
SSF54791
414 495 82 6.57E-16
IPR004088
Gene3D
G3DSA:3.30.1370.10
421 495 75 1.70E-17
IPR004088
SMART
SM00322
423 493 71 1.90E-10
IPR004087
ProSiteProfiles
PS50084
424 488 65 15.053
IPR004088
CDD
cd00105
426 489 64 1.13E-13 –
Pfam
PF00013
427 489 63 2.00E-12
IPR004088
Coils
Coil
481 501 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj5g3v1027080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1027080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.