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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1062500 |
| Transcript ID | Lj5g3v1062500.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: nephrocystin-3-like [Glycine max] gi|356548051|ref|XP_003542417.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| Phobius | 1 | 20 | 20 | – | – | |
| Phobius | 7 | 15 | 9 | – | – | |
| Phobius | 16 | 20 | 5 | – | – | |
| Phobius | 21 | 619 | 599 | – | – | |
| SUPERFAMILY | 77 | 229 | 153 | 5.06E-06 | ||
| Gene3D | 108 | 298 | 191 | 1.30E-12 | ||
| PANTHER | 112 | 558 | 447 | 2.70E-136 | – | |
| PANTHER | 112 | 558 | 447 | 2.70E-136 | – | |
| SMART | 152 | 185 | 34 | 310 | ||
| SUPERFAMILY | 193 | 344 | 152 | 1.96E-15 | ||
| ProSiteProfiles | 200 | 233 | 34 | 7.475 | ||
| ProSiteProfiles | 200 | 233 | 34 | 7.198 | ||
| SMART | 200 | 233 | 34 | 1.5 | ||
| Pfam | 203 | 237 | 35 | 2.70E-04 | ||
| SMART | 242 | 275 | 34 | 47 | ||
| Pfam | 247 | 280 | 34 | 0.0019 | ||
| Gene3D | 299 | 499 | 201 | 1.40E-18 | ||
| SMART | 362 | 395 | 34 | 20 | ||
| SUPERFAMILY | 400 | 547 | 148 | 1.04E-18 | ||
| ProSiteProfiles | 403 | 436 | 34 | 8.821 | ||
| ProSiteProfiles | 403 | 519 | 117 | 9.732 | ||
| SMART | 403 | 436 | 34 | 16 | ||
| SMART | 444 | 477 | 34 | 26 | ||
| Pfam | 454 | 512 | 59 | 9.60E-10 | – | |
| SMART | 486 | 519 | 34 | 170 | ||
| ProSiteProfiles | 486 | 519 | 34 | 6.048 | ||
| Gene3D | 500 | 580 | 81 | 7.20E-06 | ||
| SMART | 528 | 561 | 34 | 130 | ||
| Coils | 562 | 589 | 28 | – | – | |
| PANTHER | 576 | 584 | 9 | 2.70E-136 | – | |
| PANTHER | 576 | 584 | 9 | 2.70E-136 | – | |
| MobiDBLite | 583 | 619 | 37 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1062500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1062500.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.