Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1097080.1

Overview

Field Value
Gene ID Lj5g3v1097080
Transcript ID Lj5g3v1097080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA repair protein rhp26-like [Cicer arietinum] gi|502114921|ref|XP_004495082.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10799:SF624
2 7 6 1.20E-260 –
PANTHER
PTHR10799
2 7 6 1.20E-260 –
MobiDBLite
mobidb-lite
17 78 62 – –
MobiDBLite
mobidb-lite
92 151 60 – –
SUPERFAMILY
SSF52540
167 283 117 1.12E-50
IPR027417
PANTHER
PTHR10799:SF624
170 416 247 1.20E-260 –
PANTHER
PTHR10799
170 416 247 1.20E-260 –
Gene3D
G3DSA:3.40.50.300
175 281 107 5.90E-25
IPR027417
SMART
SM00487
179 411 233 1.40E-28
IPR014001
Pfam
PF00176
195 536 342 2.50E-57
IPR000330
ProSiteProfiles
PS51192
195 394 200 19.035
IPR014001
CDD
cd00046
203 376 174 1.87E-13 –
MobiDBLite
mobidb-lite
267 300 34 – –
Gene3D
G3DSA:3.40.50.300
316 391 76 5.90E-25
IPR027417
SUPERFAMILY
SSF52540
318 439 122 1.12E-50
IPR027417
PANTHER
PTHR10799
457 727 271 1.20E-260 –
PANTHER
PTHR10799:SF624
457 727 271 1.20E-260 –
SUPERFAMILY
SSF52540
474 729 256 9.78E-66
IPR027417
CDD
cd00079
548 676 129 7.34E-28 –
Gene3D
G3DSA:3.40.50.300
552 690 139 1.10E-21
IPR027417
ProSiteProfiles
PS51194
559 718 160 18.65
IPR001650
Pfam
PF00271
561 668 108 2.10E-18
IPR001650
SMART
SM00490
585 668 84 6.90E-20
IPR001650
MobiDBLite
mobidb-lite
762 798 37 – –
PANTHER
PTHR10799:SF624
822 887 66 1.20E-260 –
PANTHER
PTHR10799
822 887 66 1.20E-260 –
Coils
Coil
831 851 21 – –
MobiDBLite
mobidb-lite
942 973 32 – –
PANTHER
PTHR10799
1027 1032 6 1.20E-260 –
PANTHER
PTHR10799:SF624
1027 1032 6 1.20E-260 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 28

Expression data

Expression pattern

Expression pattern of Lj5g3v1097080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1097080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.