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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1314600 |
| Transcript ID | Lj5g3v1314600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Nucleic acid-binding, OB-fold-like protein isoform 1 [Theobroma cacao] gi|508718921|gb|EOY10818.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 194 | 194 | 2.50E-103 | – | |
| PANTHER | 1 | 194 | 194 | 2.50E-103 | – | |
| MobiDBLite | 1 | 26 | 26 | – | – | |
| Pfam | 8 | 45 | 38 | 1.60E-10 | ||
| SUPERFAMILY | 8 | 45 | 38 | 1.41E-05 | – | |
| MobiDBLite | 39 | 74 | 36 | – | – | |
| CDD | 70 | 160 | 91 | 3.07E-43 | – | |
| SUPERFAMILY | 71 | 191 | 121 | 9.36E-34 | ||
| ProSiteProfiles | 75 | 154 | 80 | 8.502 | ||
| Pfam | 101 | 142 | 42 | 1.50E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Exosome (RNase complex) | A ribonuclease complex that has 3-prime to 5-prime exoribonuclease activity and possibly endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj5g3v1314600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1314600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.