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IPR009081 is a Phosphopantetheine binding ACP domain.
<p>This entry represents the phosphopantetheine binding ACP domain. This domain forms a small negatively charged four helical bundle.</p> <p>Acyl carrier protein (ACP) is an essential cofactor in the synthesis of fatty acids by the fatty acid synthetases systems in bacteria and plants. In addition to fatty acid synthesis, ACP is also involved in many other reactions that require acyl transfer steps, such as the synthesis of polyketide antibiotics, biotin precursor, membrane-derived oligosaccharides, and activation of toxins, and functions as an essential cofactor in lipoylation of pyruvate and alpha-ketoglutarate dehydrogenase complexes [[cite:PUB00013243]]. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups [[cite:PUB00044794]]. Phosphopantetheine is attached to a serine residue in these proteins. The core structure of ACP consists of a four-helical bundle, where helix three is shorter than the others.</p> <p>Several other proteins share structural homology with ACP, such as the bacterial apo-D-alanyl carrier protein, which facilitates the incorporation of D-alanine into lipoteichoic acid by a ligase, necessary for the growth and development of Gram-positive organisms [[cite:PUB00013244]]; and the thioester domain of the bacterial peptide carrier protein (PCP) found within large modular non-ribosomal peptide synthetases, which are responsible for the synthesis of a variety of microbial bioactive peptides [[cite:PUB00013245]].</p>
This description is obtained from EB-eye REST.
Transcript | Name | Description | Predicted domains | Domain count |
---|---|---|---|---|
– | Acyl carrier protein 5 [Arabidopsis thaliana] gi|15240461|ref|NP_198072.1| | 5 | ||
– | Hypothetical protein BEWA_007150 [Babesia equi] gi|510904931|ref|XP_004830972.1| | 3 | ||
– | Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| | 32 | ||
– | 24 | |||
– | 30 | |||
– | 26 | |||
– | Acyl carrier protein [Arachis hypogaea] gi|268527775|gb|ACZ06073.1| | 13 | ||
– | Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| | 22 | ||
– | Acetyl-coenzyme A synthetase [Medicago truncatula] gi|357514737|ref|XP_003627657.1| | 12 | ||
– | Bifunctional protein aas [Medicago truncatula] gi|357454395|ref|XP_003597478.1| | 20 | ||
– | PREDICTED: acyl carrier protein 1, chloroplastic-like [Glycine max] gi|356535129|ref|XP_003536101.1| | 15 | ||
– | PREDICTED: acyl carrier protein 3, mitochondrial-like isoform 1 [Vitis vinifera] gi|225469958|ref|XP_002275522.1| | 5 | ||
– | PREDICTED: acyl carrier protein 3, mitochondrial-like [Cicer arietinum] gi|502149603|ref|XP_004507595.1| | 11 | ||
– | PREDICTED: acyl carrier protein 1, chloroplastic-like [Cicer arietinum] gi|502078834|ref|XP_004486070.1| | 16 | ||
– | Acyl carrier protein; TAIR: AT2G44620.1 mitochondrial acyl carrier protein 1; Swiss-Prot: sp|P53665|ACPM1_ARATH Acyl carrier protein 1, mitochondrial; TrEMBL-Plants: tr|I3SNP0|I3SNP0_LOTJA Acyl carrier protein; Found in the gene: LotjaGi1g1v0489700 | 12 | ||
– | Acyl carrier protein; TAIR: AT5G27200.1 acyl carrier protein 5; Swiss-Prot: sp|O04652|ACP5_ARATH Acyl carrier protein 5, chloroplastic; TrEMBL-Plants: tr|I3ST23|I3ST23_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0131500_LC | 6 | ||
– | AMP-dependent synthetase and ligase family protein; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2RJD7|A0A0B2RJD7_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0292200 | 48 | ||
– | Acyl-CoA ligase-like; TAIR: AT1G20480.1 AMP-dependent synthetase and ligase family protein; Swiss-Prot: sp|B2HIM0|FAA28_MYCMM Long-chain-fatty-acid--AMP ligase FadD28; TrEMBL-Plants: tr|A0A0B2QZ83|A0A0B2QZ83_GLYSO Long-chain-fatty-acid--AMP ligase FadD28; Found in the gene: LotjaGi3g1v0496500 | 29 | ||
– | Acyl carrier protein; TAIR: AT4G25050.1 acyl carrier protein 4; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T1G9|I3T1G9_LOTJA Acyl carrier protein; Found in the gene: LotjaGi4g1v0420700 | 15 | ||
– | Acyl carrier protein; TAIR: AT3G05020.1 acyl carrier protein 1; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3T3K1|I3T3K1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi5g1v0217100 | 15 | ||
– | Acyl carrier protein; TAIR: AT1G54630.1 acyl carrier protein 3; Swiss-Prot: sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic; TrEMBL-Plants: tr|I3SIS1|I3SIS1_LOTJA Acyl carrier protein; Found in the gene: LotjaGi6g1v0305200 | 16 |
A list of co-occurring predicted domains within the L. japonicus gene space:
Predicted domain | Source | Observations | Saturation (%) |
---|---|---|---|
TIGR00517 | TIGRFAM | 1 | 4.76 |