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Lj5g3v1518810.2

Overview

Field Value
Gene ID Lj5g3v1518810
Transcript ID Lj5g3v1518810.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA polymerase II-associated protein 3-like isoform X5 [Cicer arietinum] gi|502116957|ref|XP_004495651.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR22904
27 148 122 3.00E-69 –
PANTHER
PTHR22904:SF323
27 148 122 3.00E-69 –
Gene3D
G3DSA:1.25.40.10
45 147 103 1.30E-30
IPR011990
SUPERFAMILY
SSF48452
45 147 103 1.69E-26
IPR011990
ProSiteProfiles
PS50293
47 147 101 15.425
IPR013026
SMART
SM00028
47 80 34 3.00E-04
IPR019734
ProSiteProfiles
PS50005
47 80 34 10.414
IPR019734
Pfam
PF00515
51 79 29 6.90E-08
IPR001440
Pfam
PF00515
80 110 31 8.10E-07
IPR001440
SMART
SM00028
81 113 33 0.069
IPR019734
ProSiteProfiles
PS50005
114 147 34 7.464
IPR019734
SMART
SM00028
114 147 34 20
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj5g3v1518810.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1518810.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.