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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001440
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We have found 58 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.067s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0084729.1
n.a. PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein-like isoform 1 [Glycine max] gi|356549136|ref|XP_003542953.1| chr0 33772350 33779773 +
2 domain predictions
1 GO term
Lj0g3v0096099.1
n.a. PREDICTED: anaphase-promoting complex subunit 6-like [Cicer arietinum] gi|502169527|ref|XP_004514627.1| chr0 40478236 40487538 -
2 domain predictions
1 GO term
Lj0g3v0121109.1
n.a. PREDICTED: cell division cycle protein 27 homolog B-like, partial [Cucumis sativus] gi|449518364|ref|XP_004166212.1| chr0 53951300 53952775 -
2 domain predictions
1 GO term
Lj0g3v0134189.1
n.a. Small glutamine-rich tetratricopeptide repeat-containing protein [Medicago truncatula] gi|357489549|ref|XP_003615062.1| chr0 61446624 61450396 -
2 domain predictions
1 GO term
Lj0g3v0167769.1
n.a. Tetratricopeptide repeat-like superfamily protein isoform 1 [Theobroma cacao] gi|508698909|gb|EOX90805.1| chr0 79865918 79868056 -
2 domain predictions
1 GO term
Lj0g3v0212469.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356511742|ref|XP_003524582.1| chr0 107221596 107225718 -
2 domain predictions
1 GO term
Lj0g3v0319309.1
n.a. PREDICTED: peroxisome biogenesis protein 5-like [Glycine max] gi|356510270|ref|XP_003523862.1| chr0 166696199 166709838 +
2 domain predictions
1 GO term
Lj1g3v1384110.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356521481|ref|XP_003529384.1| chr1 16802248 16806591 -
2 domain predictions
1 GO term
Lj1g3v1548780.1
n.a. Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gi|508723577|gb|EOY15474.1| chr1 18527616 18529300 -
2 domain predictions
1 GO term
Lj2g3v2002390.1
n.a. PREDICTED: heat shock protein STI-like [Cicer arietinum] gi|502160177|ref|XP_004511659.1| chr2 30309315 30312907 +
2 domain predictions
1 GO term
Lj2g3v2002390.2
n.a. PREDICTED: heat shock protein STI-like [Glycine max] gi|356540381|ref|XP_003538668.1| chr2 30310022 30312907 +
2 domain predictions
1 GO term
Lj3g3v0718250.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cicer arietinum] gi|502155914|ref|XP_004510236.1| chr3 7777520 7782037 -
2 domain predictions
1 GO term
Lj3g3v2923190.2
n.a. PREDICTED: outer envelope protein 61, chloroplastic-like [Cicer arietinum] gi|502145945|ref|XP_004506250.1| chr3 36497142 36501605 +
2 domain predictions
1 GO term
Lj4g3v2412560.1
n.a. DnaJ homolog subfamily C member-like protein [Medicago truncatula] gi|357463393|ref|XP_003601978.1| chr4 33479089 33480142 -
2 domain predictions
1 GO term
Lj4g3v2742970.1
n.a. PREDICTED: tetratricopeptide repeat protein 1-like [Cicer arietinum] gi|502124508|ref|XP_004498557.1| chr4 36896514 36906390 +
2 domain predictions
1 GO term
Lj5g3v0803050.1
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [Glycine max] gi|356500631|ref|XP_003519135.1| chr5 11499189 11518097 +
2 domain predictions
1 GO term
Lj5g3v1303350.1
n.a. O-linked GlcNAc transferase like protein [Medicago truncatula] gi|357441255|ref|XP_003590905.1| chr5 20329688 20338844 -
2 domain predictions
1 GO term
Lj5g3v1303350.2
n.a. PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC-like isoform X2 [Cicer arietinum] gi|502116696|ref|XP_004495555.1| chr5 20329688 20338844 -
2 domain predictions
1 GO term
Lj5g3v1518810.1
n.a. PREDICTED: RNA polymerase II-associated protein 3-like isoform X1 [Cicer arietinum] gi|502116945|ref|XP_004495647.1| chr5 22134126 22137973 -
2 domain predictions
1 GO term
Lj5g3v1518810.2
n.a. PREDICTED: RNA polymerase II-associated protein 3-like isoform X5 [Cicer arietinum] gi|502116957|ref|XP_004495651.1| chr5 22135377 22137973 -
2 domain predictions
1 GO term
Lj6g3v0925630.1
n.a. PREDICTED: serine/threonine-protein phosphatase 5-like isoform X2 [Cicer arietinum] gi|502128536|ref|XP_004499995.1| chr6 9674307 9682813 -
2 domain predictions
1 GO term
Lj6g3v1629750.1
n.a. male sterility MS5 [Arabidopsis lyrata subsp]. lyrata] gi|297799972|ref|XP_002867870.1| chr6 18446657 18450118 -
2 domain predictions
1 GO term
Ljchlorog3v0000150.1
n.a. Photosystem I assembly protein Ycf3 [Medicago truncatula] gi|358349401|ref|XP_003638726.1| chloro 17245 17472 +
2 domain predictions
1 GO term
Ljchlorog3v0000160.1
n.a. n.a. chloro 17279 17700 +
2 domain predictions
1 GO term
LotjaGi1g1v0147000.1
n.a. TPR repeat-containing thioredoxin TTL1; TAIR: AT5G65160.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9MAH1|TTL1_ARATH TPR repeat-containing thioredoxin TTL1; TrEMBL-Plants: tr|G7KAB8|G7KAB8_MEDTR Inactive TPR repeat thioredoxin TTL3-like protein; Found in the gene: LotjaGi1g1v0147000 LjG1.1_chr1 25034265 25039254 +
2 domain predictions
1 GO term
LotjaGi1g1v0160000.1
n.a. Tetratricopeptide repeat; TAIR: AT4G08320.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha; TrEMBL-Plants: tr|K7M6V5|K7M6V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0160000 LjG1.1_chr1 29578932 29590136 -
2 domain predictions
1 GO term
LotjaGi1g1v0329100.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|I3SXT9|I3SXT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0329100 LjG1.1_chr1 78423081 78428115 -
2 domain predictions
1 GO term
LotjaGi1g1v0329100.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|I3SXT9|I3SXT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0329100 LjG1.1_chr1 78424411 78427837 -
2 domain predictions
1 GO term
LotjaGi1g1v0524200.1
n.a. Cell division cycle protein 27 like B; TAIR: AT2G20000.1 CDC27 family protein; Swiss-Prot: sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B; TrEMBL-Plants: tr|A0A151UB02|A0A151UB02_CAJCA Cell division cycle protein 27 isogeny; Found in the gene: LotjaGi1g1v0524200 LjG1.1_chr1 104923403 104932675 +
2 domain predictions
1 GO term
LotjaGi1g1v0524200.2
n.a. Cell division cycle protein 27 like B; TAIR: AT2G20000.1 CDC27 family protein; Swiss-Prot: sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B; TrEMBL-Plants: tr|A0A151UB02|A0A151UB02_CAJCA Cell division cycle protein 27 isogeny; Found in the gene: LotjaGi1g1v0524200 LjG1.1_chr1 104924927 104931938 +
2 domain predictions
1 GO term
LotjaGi2g1v0058900.1
n.a. Cell division cycle protein 27 like B; TAIR: AT2G20000.1 CDC27 family protein; Swiss-Prot: sp|Q8LGU6|CD27B_ARATH Cell division cycle protein 27 homolog B; TrEMBL-Plants: tr|I1N6L5|I1N6L5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0058900 LjG1.1_chr2 12281109 12305515 -
2 domain predictions
1 GO term
LotjaGi2g1v0426200.1
n.a. Tetratricopeptide repeat protein 1-like; TAIR: AT1G62740.1 stress-inducible protein; Swiss-Prot: sp|Q43468|HSOP1_SOYBN Hsp70-Hsp90 organizing protein 1; TrEMBL-Plants: tr|I1LGM2|I1LGM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426200 LjG1.1_chr2 92387436 92395275 +
2 domain predictions
1 GO term
LotjaGi2g1v0426200.2
n.a. Tetratricopeptide repeat protein 1-like; TAIR: AT1G62740.1 stress-inducible protein; Swiss-Prot: sp|Q43468|HSOP1_SOYBN Hsp70-Hsp90 organizing protein 1; TrEMBL-Plants: tr|I1LGM2|I1LGM2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0426200 LjG1.1_chr2 92387673 92391043 +
2 domain predictions
1 GO term
LotjaGi3g1v0041100.1
n.a. Anaphase-promoting complex subunit 6; TAIR: AT1G78770.1 anaphase promoting complex 6; Swiss-Prot: sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6; TrEMBL-Plants: tr|I1KDK4|I1KDK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0041100 LjG1.1_chr3 4433456 4442958 +
2 domain predictions
1 GO term
LotjaGi3g1v0089300.1
n.a. Peptidylprolyl isomerase; TAIR: AT3G25230.1 rotamase FKBP 1; Swiss-Prot: sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62; TrEMBL-Plants: tr|A0A151T0E7|A0A151T0E7_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0089300 LjG1.1_chr3 10095197 10100134 +
2 domain predictions
1 GO term
LotjaGi3g1v0089300.2
n.a. Peptidylprolyl isomerase; TAIR: AT3G25230.1 rotamase FKBP 1; Swiss-Prot: sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62; TrEMBL-Plants: tr|A0A151T0E7|A0A151T0E7_CAJCA Peptidylprolyl isomerase; Found in the gene: LotjaGi3g1v0089300 LjG1.1_chr3 10095352 10099128 +
2 domain predictions
1 GO term
LotjaGi3g1v0272700.2
n.a. Tetratricopeptide repeat-containing family protein; TAIR: AT3G07370.1 carboxyl terminus of HSC70-interacting protein; Swiss-Prot: sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP; TrEMBL-Plants: tr|I3SQ71|I3SQ71_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0272700 LjG1.1_chr3 52841845 52842464 +
2 domain predictions
1 GO term
LotjaGi3g1v0330100.1
n.a. Peroxisomal targeting signal 1 receptor; TAIR: AT5G56290.1 peroxin 5; Swiss-Prot: sp|Q9FMA3|PEX5_ARATH Peroxisome biogenesis protein 5; TrEMBL-Plants: tr|G7J0B8|G7J0B8_MEDTR Peroxisomal targeting signal 1 receptor; Found in the gene: LotjaGi3g1v0330100 LjG1.1_chr3 69758398 69776390 -
2 domain predictions
1 GO term
LotjaGi3g1v0330100.2
n.a. Peroxisomal targeting signal 1 receptor; TAIR: AT5G56290.1 peroxin 5; Swiss-Prot: sp|Q9FMA3|PEX5_ARATH Peroxisome biogenesis protein 5; TrEMBL-Plants: tr|K7KJI6|K7KJI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0330100 LjG1.1_chr3 69759648 69774198 -
2 domain predictions
1 GO term
LotjaGi3g1v0330100.3
n.a. Peroxisomal targeting signal 1 receptor; TAIR: AT5G56290.1 peroxin 5; Swiss-Prot: sp|Q9FMA3|PEX5_ARATH Peroxisome biogenesis protein 5; TrEMBL-Plants: tr|K7KJI6|K7KJI6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0330100 LjG1.1_chr3 69759648 69775026 -
2 domain predictions
1 GO term
LotjaGi3g1v0469600.1
n.a. Peptidylprolyl isomerase; TAIR: AT5G21990.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|B7ZWR6|OEP61_ARATH Outer envelope protein 61; TrEMBL-Plants: tr|I1KFG3|I1KFG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0469600 LjG1.1_chr3 88501362 88507020 +
2 domain predictions
1 GO term
LotjaGi4g1v0107700.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|A0A0L9TGI2|A0A0L9TGI2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0107700 LjG1.1_chr4 15126480 15132594 -
2 domain predictions
1 GO term
LotjaGi4g1v0130100.1
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G51280.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SD20|MS5L2_ARATH Protein POLLENLESS 3-LIKE 2; TrEMBL-Plants: tr|A0A0B2PAU9|A0A0B2PAU9_GLYSO Uncharacterized protein; Found in the gene: LotjaGi4g1v0130100 LjG1.1_chr4 19058790 19061141 +
2 domain predictions
1 GO term
LotjaGi4g1v0408800.1
n.a. Tetratricopeptide repeat-containing family protein; TAIR: AT4G30480.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1; TrEMBL-Plants: tr|C6TEB0|C6TEB0_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0408800 LjG1.1_chr4 78501056 78511613 -
2 domain predictions
1 GO term
LotjaGi5g1v0099700.1
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927029 17946679 +
2 domain predictions
1 GO term
LotjaGi5g1v0099700.2
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927738 17943832 +
2 domain predictions
1 GO term
LotjaGi5g1v0099700.3
n.a. Photosystem I assembly protein Ycf3; TAIR: AT3G11540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; TrEMBL-Plants: tr|A0A151U3N8|A0A151U3N8_CAJCA Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; Found in the gene: LotjaGi5g1v0099700 LjG1.1_chr5 17927885 17945814 +
2 domain predictions
1 GO term
LotjaGi5g1v0205100.1
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717525 50727076 -
2 domain predictions
1 GO term
LotjaGi5g1v0205100.3
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50726534 -
2 domain predictions
1 GO term
LotjaGi5g1v0205100.4
n.a. Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT3G04240.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC; TrEMBL-Plants: tr|G7I5N5|G7I5N5_MEDTR Peptide-N-acetylglucosaminyltransferase; Found in the gene: LotjaGi5g1v0205100 LjG1.1_chr5 50717834 50726534 -
2 domain predictions
1 GO term