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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1533550 |
| Transcript ID | Lj5g3v1533550.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Glycine max] gi|356574052|ref|XP_003555166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 11 | 10 | 0 | – | |
| PANTHER | 2 | 11 | 10 | 0 | – | |
| PANTHER | 83 | 726 | 644 | 0 | – | |
| PANTHER | 83 | 726 | 644 | 0 | – | |
| Gene3D | 98 | 319 | 222 | 3.50E-72 | ||
| ProSiteProfiles | 103 | 131 | 29 | 8.002 | ||
| CDD | 108 | 310 | 203 | 2.05E-76 | – | |
| SMART | 122 | 327 | 206 | 1.70E-56 | ||
| Pfam | 127 | 299 | 173 | 2.70E-47 | ||
| ProSiteProfiles | 134 | 310 | 177 | 29.975 | ||
| SUPERFAMILY | 181 | 464 | 284 | 1.19E-70 | ||
| Gene3D | 320 | 476 | 157 | 1.30E-49 | ||
| Pfam | 338 | 444 | 107 | 3.40E-31 | ||
| ProSiteProfiles | 339 | 484 | 146 | 23.276 | ||
| CDD | 348 | 452 | 105 | 2.75E-39 | – | |
| SMART | 364 | 444 | 81 | 1.10E-31 | ||
| Pfam | 531 | 632 | 102 | 6.00E-17 | ||
| CDD | 538 | 619 | 82 | 9.89E-14 | – | |
| MobiDBLite | 635 | 744 | 110 | – | – | |
| SUPERFAMILY | 716 | 754 | 39 | 1.47E-09 | ||
| Gene3D | 731 | 753 | 23 | 1.20E-06 | ||
| SMART | 735 | 751 | 17 | 1.00E-05 | ||
| Pfam | 735 | 751 | 17 | 2.30E-07 | ||
| ProSiteProfiles | 736 | 751 | 16 | 10.971 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v1533550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1533550.1, powered by CORGI.
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