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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1598340 |
| Transcript ID | Lj5g3v1598340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357442213|ref|XP_003591384.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 481 | 481 | 5.20E-160 | – | |
| PANTHER | 1 | 481 | 481 | 5.20E-160 | – | |
| ProSiteProfiles | 62 | 96 | 35 | 5.656 | ||
| Gene3D | 129 | 331 | 203 | 9.00E-12 | ||
| ProSiteProfiles | 130 | 164 | 35 | 10.117 | ||
| Pfam | 132 | 161 | 30 | 3.50E-05 | ||
| TIGRFAM | 132 | 162 | 31 | 4.40E-04 | ||
| SUPERFAMILY | 134 | 207 | 74 | 8.01E-07 | ||
| TIGRFAM | 167 | 199 | 33 | 3.60E-04 | ||
| ProSiteProfiles | 167 | 198 | 32 | 6.686 | ||
| Pfam | 167 | 196 | 30 | 4.40E-04 | ||
| ProSiteProfiles | 199 | 229 | 31 | 6.029 | ||
| ProSiteProfiles | 235 | 265 | 31 | 6.971 | ||
| Pfam | 238 | 263 | 26 | 0.42 | ||
| SUPERFAMILY | 239 | 360 | 122 | 8.01E-07 | ||
| ProSiteProfiles | 270 | 304 | 35 | 6.5 | ||
| Pfam | 273 | 298 | 26 | 0.6 | ||
| Pfam | 306 | 333 | 28 | 0.3 | ||
| ProSiteProfiles | 339 | 373 | 35 | 7.158 | ||
| Pfam | 344 | 368 | 25 | 0.8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1598340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1598340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.