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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1602390 |
| Transcript ID | Lj5g3v1602390.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] gi|356500262|ref|XP_003518952.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| Phobius | 10 | 22 | 13 | – | – | |
| Phobius | 23 | 27 | 5 | – | – | |
| PANTHER | 24 | 496 | 473 | 9.30E-283 | ||
| PANTHER | 24 | 496 | 473 | 9.30E-283 | – | |
| Phobius | 28 | 497 | 470 | – | – | |
| Gene3D | 35 | 170 | 136 | 2.30E-63 | ||
| Hamap | 36 | 494 | 459 | 88.147 | ||
| SUPERFAMILY | 36 | 492 | 457 | 1.57E-153 | ||
| TIGRFAM | 36 | 493 | 458 | 3.60E-231 | ||
| CDD | 37 | 491 | 455 | 0 | – | |
| Pfam | 44 | 374 | 331 | 2.40E-115 | ||
| PRINTS | 166 | 184 | 19 | 1.50E-35 | ||
| Gene3D | 171 | 435 | 265 | 4.50E-111 | – | |
| PRINTS | 212 | 230 | 19 | 1.50E-35 | ||
| PRINTS | 303 | 330 | 28 | 1.50E-35 | ||
| ProSitePatterns | 349 | 358 | 10 | – | ||
| PRINTS | 349 | 365 | 17 | 1.50E-35 | ||
| Gene3D | 437 | 495 | 59 | 1.70E-31 | – | |
| Pfam | 440 | 493 | 54 | 5.40E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Fumarate hydratase activity | Catalysis of the reaction: (S)-malate = fumarate + H(2)O. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Biological process | Fumarate metabolic process | The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. | ||
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. | ||
| Cellular component | Tricarboxylic acid cycle enzyme complex | Any of the heteromeric enzymes that act in the TCA cycle. |
Expression pattern of Lj5g3v1602390.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1602390.1, powered by CORGI.
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