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Lj5g3v1693600.1

Overview

Field Value
Gene ID Lj5g3v1693600
Transcript ID Lj5g3v1693600.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3-like [Cicer arietinum] gi|502118020|ref|XP_004496061.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 174 174 – –
PANTHER
PTHR27006
137 589 453 1.30E-275 –
PANTHER
PTHR27006:SF36
137 589 453 1.30E-275 –
Gene3D
G3DSA:2.60.120.200
164 254 91 2.90E-14
IPR013320
TMHMM
TMhelix
175 197 23 – –
Phobius
TRANSMEMBRANE
175 200 26 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
201 590 390 – –
SUPERFAMILY
SSF56112
229 537 309 2.80E-76
IPR011009
ProSiteProfiles
PS50011
247 527 281 34.563
IPR000719
Pfam
PF00069
247 459 213 7.70E-42
IPR000719
SMART
SM00220
247 521 275 1.70E-30
IPR000719
ProSitePatterns
PS00107
253 275 23 –
IPR017441
Gene3D
G3DSA:3.30.200.20
255 328 74 8.70E-18 –
Gene3D
G3DSA:1.10.510.10
330 525 196 2.60E-41 –
ProSitePatterns
PS00108
372 384 13 –
IPR008271
MobiDBLite
mobidb-lite
548 590 43 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj5g3v1693600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1693600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.