Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj5g3v1699070.2

Overview

Field Value
Gene ID Lj5g3v1699070
Transcript ID Lj5g3v1699070.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RNA-binding protein Nova-1-like [Glycine max] gi|356535513|ref|XP_003536289.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
PANTHER
PTHR10288:SF142
2 17 16 1.10E-123 –
PANTHER
PTHR10288
2 17 16 1.10E-123 –
SMART
SM00322
34 107 74 4.70E-11
IPR004087
Gene3D
G3DSA:3.30.1370.10
35 108 74 1.10E-19
IPR004088
SUPERFAMILY
SSF54791
35 111 77 6.87E-18
IPR004088
ProSiteProfiles
PS50084
35 102 68 16.437
IPR004088
PANTHER
PTHR10288:SF142
36 333 298 1.10E-123 –
PANTHER
PTHR10288
36 333 298 1.10E-123 –
Pfam
PF00013
38 103 66 7.90E-15
IPR004088
CDD
cd02396
38 103 66 5.49E-20 –
SMART
SM00322
120 193 74 7.90E-12
IPR004087
Gene3D
G3DSA:3.30.1370.10
120 196 77 2.50E-19
IPR004088
ProSiteProfiles
PS50084
121 188 68 15.347
IPR004088
SUPERFAMILY
SSF54791
123 197 75 5.55E-17
IPR004088
CDD
cd02396
125 189 65 1.07E-17 –
Pfam
PF00013
125 189 65 4.80E-14
IPR004088
SMART
SM00322
255 328 74 2.80E-12
IPR004087
ProSiteProfiles
PS50084
256 323 68 17.674
IPR004088
Gene3D
G3DSA:3.30.1370.10
258 328 71 4.10E-18
IPR004088
CDD
cd00105
258 323 66 1.60E-13 –
SUPERFAMILY
SSF54791
258 329 72 1.90E-16
IPR004088
Pfam
PF00013
260 324 65 1.40E-13
IPR004088

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj5g3v1699070.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1699070.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.