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Lj5g3v1699470.1

Overview

Field Value
Gene ID Lj5g3v1699470
Transcript ID Lj5g3v1699470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Cicer arietinum] gi|502118212|ref|XP_004496155.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10343
9 374 366 4.10E-225 –
PANTHER
PTHR10343:SF58
9 374 366 4.10E-225
IPR030079
MobiDBLite
mobidb-lite
46 71 26 – –
Gene3D
G3DSA:3.90.190.10
88 235 148 1.20E-22
IPR029021
SUPERFAMILY
SSF52799
91 235 145 3.26E-24
IPR029021
SMART
SM00195
93 243 151 1.50E-04
IPR020422
Pfam
PF00782
146 231 86 1.20E-11
IPR000340
ProSiteProfiles
PS50056
170 228 59 11.253
IPR000387
SUPERFAMILY
SSF81296
251 334 84 2.83E-16
IPR014756
CDD
cd02859
252 333 82 1.80E-25 –
Pfam
PF16561
252 334 83 3.90E-19
IPR032640

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005982
Biological process Starch metabolic process The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0007623
Biological process Circadian rhythm Any biological process in an organism that recurs with a regularity of approximately 24 hours.
Subterm of
GO:0008138
Molecular function Protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of
GO:0019203
Molecular function Carbohydrate phosphatase activity Catalysis of the reaction: carbohydrate phosphate + H2O = carbohydrate + phosphate.
Subterm of

Genome browser

LORE1 insertions 47

Expression data

Expression pattern

Expression pattern of Lj5g3v1699470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1699470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.