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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000340
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.756s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0256839.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356568041|ref|XP_003552222.1| chr0 133328014 133337632 -
2 domain predictions
2 GO terms
Lj1g3v1182240.1
n.a. PREDICTED: laforin-like [Glycine max] gi|356516265|ref|XP_003526816.1| chr1 14478421 14481745 -
2 domain predictions
2 GO terms
Lj1g3v1454030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502133383|ref|XP_004501744.1| chr1 17440626 17448475 -
2 domain predictions
2 GO terms
Lj1g3v3183530.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like [Cicer arietinum] gi|502102464|ref|XP_004492084.1| chr1 36267168 36269313 +
2 domain predictions
2 GO terms
Lj1g3v3641900.1
n.a. PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic-like [Cicer arietinum] gi|502170387|ref|XP_004514819.1| chr1 41881275 41888584 -
2 domain predictions
2 GO terms
Lj1g3v4107140.1
n.a. PREDICTED: dual specificity protein phosphatase 12-like isoform X2 [Cicer arietinum] gi|502108122|ref|XP_004493392.1| chr1 48870142 48873448 +
2 domain predictions
2 GO terms
Lj1g3v4419670.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51456840 51464722 +
2 domain predictions
2 GO terms
Lj1g3v4419670.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51457055 51465527 +
2 domain predictions
2 GO terms
Lj1g3v4419670.3
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1| chr1 51458663 51464405 +
2 domain predictions
2 GO terms
Lj2g3v1904480.1
n.a. Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Medicago truncatula] gi|357482767|ref|XP_003611670.1| chr2 28266262 28272156 +
2 domain predictions
2 GO terms
Lj2g3v2856060.1
n.a. PREDICTED: protein-tyrosine-phosphatase IBR5-like [Glycine max] gi|356501245|ref|XP_003519436.1| chr2 37286685 37291316 +
2 domain predictions
2 GO terms
Lj3g3v1603870.1
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356504293|ref|XP_003520931.1| chr3 20307783 20324220 -
2 domain predictions
2 GO terms
Lj3g3v1603870.2
n.a. PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356496154|ref|XP_003516935.1| chr3 20307783 20324220 -
2 domain predictions
2 GO terms
Lj4g3v1217120.1
n.a. PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like protein-like [Glycine max] gi|356510670|ref|XP_003524059.1| chr4 18103304 18107179 -
2 domain predictions
2 GO terms
Lj4g3v2400750.1
n.a. PREDICTED: dual specificity protein phosphatase 1-like isoform X1 [Cicer arietinum] gi|502151309|ref|XP_004508377.1| chr4 33142302 33145580 -
2 domain predictions
2 GO terms
Lj4g3v2400750.2
n.a. PREDICTED: dual specificity protein phosphatase 1-like isoform X2 [Cicer arietinum] gi|502151311|ref|XP_004508378.1| chr4 33142302 33145580 -
2 domain predictions
2 GO terms
Lj4g3v2882030.1
n.a. PREDICTED: dual specificity protein phosphatase PHS1-like [Cicer arietinum] gi|502139515|ref|XP_004503799.1| chr4 38497942 38503834 -
2 domain predictions
2 GO terms
Lj4g3v3032690.1
n.a. PREDICTED: protein-tyrosine phosphatase mitochondrial 1-like [Glycine max] gi|356523809|ref|XP_003530527.1| chr4 40607657 40610010 -
2 domain predictions
2 GO terms
Lj5g3v1699470.1
n.a. PREDICTED: phosphoglucan phosphatase DSP4, chloroplastic-like [Cicer arietinum] gi|502118212|ref|XP_004496155.1| chr5 24725958 24733943 +
2 domain predictions
2 GO terms
Lj5g3v2240850.1
n.a. Phosphotyrosine protein phosphatases superfamily protein [Theobroma cacao] gi|508721723|gb|EOY13620.1| chr5 32196349 32198915 -
2 domain predictions
2 GO terms
Lj6g3v0574850.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X1 [Cicer arietinum] gi|502135593|ref|XP_004502386.1| chr6 5731146 5735480 -
2 domain predictions
2 GO terms
Lj6g3v0574860.1
n.a. PREDICTED: protein-tyrosine-phosphatase MKP1-like isoform X2 [Cicer arietinum] gi|502135596|ref|XP_004502387.1| chr6 5731394 5735480 -
2 domain predictions
2 GO terms
LotjaGi1g1v0068800.1
n.a. Dual specificity protein phosphatase, putative; TAIR: AT2G04550.1 indole-3-butyric acid response 5; Swiss-Prot: sp|Q84JU4|IBR5_ARATH Protein-tyrosine-phosphatase IBR5; TrEMBL-Plants: tr|I1JIH0|I1JIH0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0068800 LjG1.1_chr1 9488950 9494300 -
2 domain predictions
2 GO terms
LotjaGi1g1v0309000.1
n.a. Dual specificity protein phosphatase, putative; TAIR: AT3G10940.1 dual specificity protein phosphatase (DsPTP1) family protein; Swiss-Prot: sp|Q9SRK5|LSF2_ARATH Phosphoglucan phosphatase LSF2, chloroplastic; TrEMBL-Plants: tr|I3SHM7|I3SHM7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0309000 LjG1.1_chr1 75055825 75059256 -
2 domain predictions
2 GO terms
LotjaGi1g1v0334000.1
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A0S3RFM3|A0A0S3RFM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334000 LjG1.1_chr1 79255119 79263545 -
2 domain predictions
2 GO terms
LotjaGi1g1v0334000.2
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.3 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A151R609|A0A151R609_CAJCA Dual specificity protein phosphatase 3; Found in the gene: LotjaGi1g1v0334000 LjG1.1_chr1 79256020 79258606 -
2 domain predictions
2 GO terms
LotjaGi1g1v0533600.1
n.a. Dual specificity phosphatase; TAIR: AT3G55270.1 mitogen-activated protein kinase phosphatase 1; Swiss-Prot: sp|Q9C5S1|MKP1_ARATH Protein-tyrosine-phosphatase MKP1; TrEMBL-Plants: tr|A0A0L9U245|A0A0L9U245_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0533600 LjG1.1_chr1 106201455 106207397 +
2 domain predictions
2 GO terms
LotjaGi1g1v0572100.1
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110569859 110582766 -
2 domain predictions
2 GO terms
LotjaGi1g1v0572100.2
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
2 GO terms
LotjaGi1g1v0572100.3
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|A0A0R0FB81|A0A0R0FB81_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
2 GO terms
LotjaGi1g1v0572100.4
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7MTE7|K7MTE7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0572100 LjG1.1_chr1 110573483 110580978 -
2 domain predictions
2 GO terms
LotjaGi1g1v0607500.1
n.a. Phosphoglucan phosphatase LSF1; TAIR: AT3G01510.1 like SEX4 1; Swiss-Prot: sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic; TrEMBL-Plants: tr|K7MWV8|K7MWV8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0607500 LjG1.1_chr1 115219332 115227294 -
2 domain predictions
2 GO terms
LotjaGi1g1v0662200.1
n.a. Dual specificity protein phosphatase, putative; TAIR: AT4G18593.1 dual specificity protein phosphatase-like protein; Swiss-Prot: sp|Q9UNI6|DUS12_HUMAN Dual specificity protein phosphatase 12; TrEMBL-Plants: tr|Q2HSZ6|Q2HSZ6_MEDTR Dual specificity phosphatase domain protein; Found in the gene: LotjaGi1g1v0662200 LjG1.1_chr1 122339375 122343098 +
2 domain predictions
2 GO terms
LotjaGi1g1v0728900.1
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|A0A0B2SM84|A0A0B2SM84_GLYSO mRNA-capping enzyme; Found in the gene: LotjaGi1g1v0728900 LjG1.1_chr1 130049154 130058486 +
2 domain predictions
2 GO terms
LotjaGi2g1v0404800.1
n.a. Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN; TAIR: AT3G19420.1 PTEN 2; Swiss-Prot: sp|Q9LT75|PTN2A_ARATH Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN2A; TrEMBL-Plants: tr|I1J9A2|I1J9A2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0404800 LjG1.1_chr2 90166198 90172607 +
2 domain predictions
2 GO terms
LotjaGi3g1v0215700.1
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7KDH1|K7KDH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32373610 32391001 -
2 domain predictions
2 GO terms
LotjaGi3g1v0215700.2
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7K355|K7K355_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374377 32390993 -
2 domain predictions
2 GO terms
LotjaGi3g1v0215700.3
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|A0A151RAA8|A0A151RAA8_CAJCA mRNA-capping enzyme; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374844 32390402 -
2 domain predictions
2 GO terms
LotjaGi3g1v0215700.4
n.a. mRNA-capping enzyme; TAIR: AT3G09100.2 mRNA capping enzyme family protein; Swiss-Prot: sp|O55236|MCE1_MOUSE mRNA-capping enzyme; TrEMBL-Plants: tr|K7K355|K7K355_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0215700 LjG1.1_chr3 32374844 32390402 -
2 domain predictions
2 GO terms
LotjaGi4g1v0200000.1
n.a. Dual specificity protein phosphatase; TAIR: AT2G35680.1 Phosphotyrosine protein phosphatases superfamily protein; Swiss-Prot: sp|Q9ZQP1|DSP8_ARATH Putative dual specificity protein phosphatase DSP8; TrEMBL-Plants: tr|I1K0T6|I1K0T6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0200000 LjG1.1_chr4 46323441 46328052 -
2 domain predictions
2 GO terms
LotjaGi4g1v0352400.1
n.a. Dual specificity protein phosphatase; TAIR: AT3G23610.1 dual specificity protein phosphatase 1; Swiss-Prot: sp|Q9ZR37|DUS1_ARATH Dual specificity protein phosphatase 1; TrEMBL-Plants: tr|A0A072V237|A0A072V237_MEDTR Dual specificity protein phosphatase; Found in the gene: LotjaGi4g1v0352400 LjG1.1_chr4 73098750 73102583 -
2 domain predictions
2 GO terms
LotjaGi4g1v0392500.1
n.a. Dual specificity protein phosphatase, putative; TAIR: AT3G55270.1 mitogen-activated protein kinase phosphatase 1; Swiss-Prot: sp|Q9C5S1|MKP1_ARATH Protein-tyrosine-phosphatase MKP1; TrEMBL-Plants: tr|A0A1J7GIS4|A0A1J7GIS4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0392500 LjG1.1_chr4 77098626 77103185 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.1
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A1J7IUU8|A0A1J7IUU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79614240 79620851 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.2
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A072TU75|A0A072TU75_MEDTR Dual specificity phosphatase family protein; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79614240 79620851 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.3
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A0B2Q765|A0A0B2Q765_GLYSO Dual specificity protein phosphatase 1; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79614240 79620851 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.4
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|K7KS75|K7KS75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79614240 79620851 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.5
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.3 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A0B2Q765|A0A0B2Q765_GLYSO Dual specificity protein phosphatase 1; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79614847 79620295 +
2 domain predictions
2 GO terms
LotjaGi4g1v0421000.6
n.a. Dual specificity phosphatase family protein; TAIR: AT5G23720.1 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A1J7IUU8|A0A1J7IUU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0421000 LjG1.1_chr4 79618642 79620295 +
2 domain predictions
2 GO terms
LotjaGi4g1v0443600.1
n.a. Dual specificity phosphatase; TAIR: AT2G35680.1 Phosphotyrosine protein phosphatases superfamily protein; Swiss-Prot: sp|Q9ZQP1|DSP8_ARATH Putative dual specificity protein phosphatase DSP8; TrEMBL-Plants: tr|I1KPV3|I1KPV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0443600 LjG1.1_chr4 81698410 81701416 -
2 domain predictions
2 GO terms
LotjaGi4g1v0443600.2
n.a. Dual specificity phosphatase; TAIR: AT2G35680.1 Phosphotyrosine protein phosphatases superfamily protein; Swiss-Prot: sp|Q9ZQP1|DSP8_ARATH Putative dual specificity protein phosphatase DSP8; TrEMBL-Plants: tr|G7L7D1|G7L7D1_MEDTR Dual specificity phosphatase domain protein; Found in the gene: LotjaGi4g1v0443600 LjG1.1_chr4 81699344 81701140 -
2 domain predictions
2 GO terms