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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2013760 |
| Transcript ID | Lj5g3v2013760.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like isoform X1 [Cicer arietinum] gi|502119302|ref|XP_004496572.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 84 | 106 | 23 | 2.90E-209 | – | |
| PANTHER | 84 | 106 | 23 | 2.90E-209 | – | |
| PANTHER | 130 | 466 | 337 | 2.90E-209 | – | |
| PANTHER | 130 | 466 | 337 | 2.90E-209 | – | |
| ProSiteProfiles | 155 | 189 | 35 | 8.298 | ||
| Gene3D | 156 | 207 | 52 | 1.90E-07 | ||
| ProSiteProfiles | 190 | 224 | 35 | 7.936 | ||
| ProSiteProfiles | 225 | 259 | 35 | 6.884 | ||
| ProSiteProfiles | 260 | 294 | 35 | 10.271 | ||
| Pfam | 263 | 292 | 30 | 0.085 | ||
| SUPERFAMILY | 270 | 465 | 196 | 2.01E-05 | – | |
| Pfam | 294 | 342 | 49 | 1.40E-09 | ||
| ProSiteProfiles | 295 | 329 | 35 | 11.038 | ||
| TIGRFAM | 297 | 331 | 35 | 3.10E-06 | ||
| ProSiteProfiles | 330 | 364 | 35 | 11.411 | ||
| Gene3D | 333 | 464 | 132 | 1.90E-07 | ||
| TIGRFAM | 334 | 366 | 33 | 4.50E-09 | ||
| Pfam | 364 | 412 | 49 | 3.60E-17 | ||
| ProSiteProfiles | 365 | 399 | 35 | 11.707 | ||
| TIGRFAM | 367 | 401 | 35 | 9.90E-07 | ||
| ProSiteProfiles | 400 | 434 | 35 | 14.732 | ||
| TIGRFAM | 402 | 436 | 35 | 2.50E-13 | ||
| Pfam | 423 | 466 | 44 | 2.60E-04 | ||
| ProSiteProfiles | 435 | 469 | 35 | 9.482 | ||
| TIGRFAM | 437 | 466 | 30 | 0.001 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2013760.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2013760.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.