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Lj5g3v2028360.2

Overview

Field Value
Gene ID Lj5g3v2028360
Transcript ID Lj5g3v2028360.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: valyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356535908|ref|XP_003536484.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11946:SF5
1 391 391 0
IPR002303
PANTHER
PTHR11946
1 391 391 0 –
SUPERFAMILY
SSF50677
23 173 151 1.23E-53
IPR009008
Pfam
PF00133
26 451 426 2.20E-127
IPR002300
Gene3D
G3DSA:3.90.740.10
28 168 141 1.50E-43
IPR009008
TIGRFAM
TIGR00422
28 713 686 4.70E-205
IPR002303
PRINTS
PR00986
61 78 18 1.20E-30
IPR002303
SUPERFAMILY
SSF52374
153 392 240 7.51E-69 –
Gene3D
G3DSA:3.40.50.620
170 392 223 1.80E-65
IPR014729
PRINTS
PR00986
178 191 14 1.20E-30
IPR002303
PRINTS
PR00986
296 317 22 1.20E-30
IPR002303
PRINTS
PR00986
327 345 19 1.20E-30
IPR002303
PANTHER
PTHR11946:SF5
429 683 255 0
IPR002303
PANTHER
PTHR11946
429 683 255 0 –
SUPERFAMILY
SSF52374
430 461 32 7.51E-69 –
Gene3D
G3DSA:3.40.50.620
430 450 21 1.80E-65
IPR014729
CDD
cd07962
451 591 141 2.10E-54
IPR033705
Gene3D
G3DSA:1.10.730.10
452 641 190 3.10E-54
IPR009080
SUPERFAMILY
SSF47323
463 694 232 2.80E-52
IPR009080
Pfam
PF08264
497 640 144 7.40E-37
IPR013155
Coils
Coil
617 637 21 – –
PANTHER
PTHR11946
704 727 24 0 –
PANTHER
PTHR11946:SF5
704 727 24 0
IPR002303

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0002161
Molecular function Aminoacyl-tRNA editing activity The hydrolysis of an incorrectly aminoacylated tRNA.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004832
Molecular function Valine-tRNA ligase activity Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of
GO:0006438
Biological process Valyl-tRNA aminoacylation The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. The valyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a valine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj5g3v2028360.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2028360.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.