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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2046080 |
| Transcript ID | Lj5g3v2046080.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Cicer arietinum] gi|502119767|ref|XP_004496732.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 45 | 75 | 31 | 8.133 | ||
| Gene3D | 49 | 326 | 278 | 3.10E-05 | ||
| Pfam | 49 | 73 | 25 | 0.04 | ||
| PANTHER | 62 | 205 | 144 | 0 | – | |
| PANTHER | 62 | 205 | 144 | 0 | – | |
| ProSiteProfiles | 76 | 106 | 31 | 9.251 | ||
| TIGRFAM | 78 | 103 | 26 | 3.80E-05 | ||
| Pfam | 79 | 103 | 25 | 1.80E-04 | ||
| Pfam | 106 | 153 | 48 | 1.20E-09 | ||
| ProSiteProfiles | 107 | 141 | 35 | 11.345 | ||
| TIGRFAM | 109 | 142 | 34 | 5.10E-06 | ||
| ProSiteProfiles | 177 | 207 | 31 | 6.39 | ||
| Pfam | 182 | 205 | 24 | 0.013 | ||
| ProSiteProfiles | 208 | 242 | 35 | 10.194 | ||
| Pfam | 210 | 238 | 29 | 4.80E-05 | ||
| TIGRFAM | 211 | 239 | 29 | 2.30E-04 | ||
| PANTHER | 237 | 651 | 415 | 0 | – | |
| PANTHER | 237 | 651 | 415 | 0 | – | |
| Pfam | 239 | 287 | 49 | 1.70E-07 | ||
| TIGRFAM | 241 | 275 | 35 | 6.80E-05 | ||
| ProSiteProfiles | 243 | 274 | 32 | 6.489 | ||
| ProSiteProfiles | 275 | 309 | 35 | 6.204 | ||
| ProSiteProfiles | 310 | 340 | 31 | 5.821 | ||
| ProSiteProfiles | 343 | 373 | 31 | 7.903 | ||
| TIGRFAM | 347 | 376 | 30 | 0.0024 | ||
| ProSiteProfiles | 374 | 408 | 35 | 11.433 | ||
| Pfam | 374 | 421 | 48 | 5.80E-09 | ||
| TIGRFAM | 376 | 409 | 34 | 2.10E-05 | ||
| ProSiteProfiles | 441 | 471 | 31 | 7.213 | ||
| Pfam | 446 | 469 | 24 | 0.3 | ||
| Gene3D | 451 | 503 | 53 | 1.20E-06 | ||
| SUPERFAMILY | 452 | 525 | 74 | 1.00E-07 | ||
| ProSiteProfiles | 473 | 507 | 35 | 11.959 | ||
| Pfam | 473 | 519 | 47 | 2.50E-10 | ||
| TIGRFAM | 475 | 508 | 34 | 1.30E-06 | ||
| ProSiteProfiles | 508 | 542 | 35 | 6.018 | ||
| ProSiteProfiles | 544 | 574 | 31 | 7.278 | ||
| Pfam | 547 | 571 | 25 | 0.16 | ||
| Gene3D | 577 | 632 | 56 | 2.40E-04 | ||
| SUPERFAMILY | 583 | 633 | 51 | 1.00E-07 | ||
| ProSiteProfiles | 610 | 644 | 35 | 9.01 | ||
| Pfam | 613 | 640 | 28 | 0.81 | ||
| Pfam | 647 | 770 | 124 | 9.00E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj5g3v2046080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2046080.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.